Job Description P21893 Confidence 35.28% Date Thu Jan 5 11:38:41 GMT 2012 Rank 225 Aligned Residues 89 % Identity 13% Template c2o1eB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ycdh; PDBTitle: crystal structure of the metal-dependent lipoprotein ycdh2 from bacillus subtilis, northeast structural genomics3 target sr583 Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																			.	.											.
Query SS confidence																			.	.											.
Query Sequence		A	T	S	T	A	L	S	V	L	A	M	R	S	L	G	C	S	.	.	N	I	D	Y	L	V	P	N	R	F	.	E	D	G	Y	G	L	S	P	E	V	V	D	Q	A	H	A	R	G	A	Q	L	I	V	T	V	D	N	G	I	S	S	H	A	G	V	E	H	A	R	S	L	G	I	P	V	I	V	T	D	H
Query Conservation																			.	.											.
Alig confidence																			.	.											.																		.	.
Template Conservation																																																	.	.
Template Sequence		V	T	T	F	Y	P	X	Y	E	F	T	K	Q	I	V	K	D	K	G	D	V	D	L	L	I	P	S	S	V	E	P	H	D	W	E	P	T	P	K	D	I	A	N	I	Q	D	A	.	.	D	L	F	V	Y	N	S	E	Y	X	E	T	W	V	P	S	A	E	K	S	X	G	Q	G	H	A	V	F	V	N	A
Template Known Secondary structure				S	S												G	G	G						S	S		T	T	S		T	T	T														S	.	.	S					S		T	T	T	S	T	T							T	T		S	S	S						T
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	P	G	D	T	L	P	A	A	E	A	I	I	N	P	N
Query Conservation
Alig confidence												.	.	.
Template Conservation												.	.	.
Template Sequence		S	K	G	I	D	L	X	E	G	A	.	.	.	X	D	P	H
Template Known Secondary structure		T	T	T					B			.	.	.	B			G
Template Predicted Secondary structure												.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.				.	.	110	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions