Job Description P21893 Confidence 26.63% Date Thu Jan 5 11:38:41 GMT 2012 Rank 322 Aligned Residues 79 % Identity 16% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.
Predicted Secondary structure																																																									.	.	.	.														.	.	.	.
Query SS confidence																																																									.	.	.	.														.	.	.	.
Query Sequence		I	I	V	V	G	D	F	D	A	D	G	A	T	S	T	A	L	S	V	L	A	M	R	S	L	G	C	S	N	I	D	Y	L	V	P	N	R	F	E	D	G	Y	G	L	S	P	E	V	V	D	Q	A	H	A	R	.	.	.	.	G	A	Q	L	I	V	T	V	D	N	G	I	S	.	.	.	.	S	H	A	G
Query Conservation																																																									.	.	.	.														.	.	.	.
Alig confidence																												.													.	.	.	.	.	.											.	.	.	.						.								.	.	.	.
Template Conservation																												.													.	.	.	.	.	.																				.
Template Sequence		I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	.	W	K	T	C	L	I	C	A	D	T	F	R	.	.	.	.	.	.	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	.	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G
Template Known Secondary structure							S	T	T	S	S															T	T	.											S	S	.	.	.	.	.	.	S														T					.						S
Template Predicted Secondary structure																												.													.	.	.	.	.	.																				.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.							.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	H	A	R	S	L	G	I	P	V	I	V	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	K	F	K	N	E	N	F	E	I	I	I	V	D
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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