Job Description P06986 Confidence 99.81% Date Thu Jan 5 10:59:42 GMT 2012 Rank 192 Aligned Residues 337 % Identity 15% Template d2v1pa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases Beta-eliminating lyases Resolution 1.9

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.		.
Query SS confidence																																														.	.	.		.
Query Sequence		R	E	N	V	R	N	L	T	P	Y	Q	S	A	R	R	L	G	G	N	G	D	V	W	L	N	A	N	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	L	N	R	.	.	.	Y	.	P	E	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E
Query Conservation																																														.	.	.		.
Alig confidence																																														.	.	.		.																				.	.
Template Conservation																																																																						.	.
Template Sequence		R	E	E	A	I	I	K	S	G	M	N	P	F	L	L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	R	G	D	E	A	F	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	.	.	Y	T	I	P	T	H	Q	G	R	G
Template Known Secondary structure									T	T	S		G	G	G	S		G	G	G		S				S			T	T		S										T	T	S					S	S	S															T			S	.	.							S	S	T	T
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.										.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.											.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.															.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.															.	.
Query Sequence		G	I	E	L	L	I	R	A	F	C	E	P	G	K	D	A	I	L	Y	C	P	P	.	.	.	.	.	.	.	.	.	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	.	.	.	.	.	.	.	.	.	.	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	.	.
Query Conservation																								.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.															.	.
Alig confidence															.									.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation															.
Template Sequence		A	E	Q	I	Y	I	P	V	L	I	K	K	R	.	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V
Template Known Secondary structure		T													.								T	T	T						S	S												T	T							B		T	T	T	T		T	T	S			T	T	T	T		B
Template Predicted Secondary structure															.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
					146	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.												.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.
Predicted Secondary structure		.	.	.															.																						.							.	.	.	.	.	.	.	.	.	.	.																			.	.
Query SS confidence		.	.	.															.																						.							.	.	.	.	.	.	.	.	.	.	.																			.	.
Query Sequence		.	.	.	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	.	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	I	.	V	V	A	D	E	A	.	.	.	.	.	.	.	.	.	.	.	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	.	.	H	L	A
Query Conservation		.	.	.															.																						.							.	.	.	.	.	.	.	.	.	.	.																			.	.
Alig confidence		.	.	.															.																						.							.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation
Template Sequence		G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M
Template Known Secondary structure			G	G	G								S	S	B		G	G	G		B																	T	T								T	T													G	G	G	T	T	S										G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.							.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																								.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.
Query Sequence		I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	P	L	.	.	.	.	.	.	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A
Query Conservation																																								.	.	.	.	.	.
Alig confidence												.																												.	.	.	.	.	.
Template Conservation												.
Template Sequence		L	A	M	S	A	K	K	D	A	M	.	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D
Template Known Secondary structure						S	S	S	T	T		.		S	S								S	G	G	G													T	T	S	S																					T	T
Template Predicted Secondary structure												.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.													.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330													.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	.	.	.	.	.	.	.	.	.	.	.	.	F	K	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	.	.	.	.	.	.	.	.	.	.	.	.	S	G	C	L	R	I	T
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.
Template Sequence		G	L	E	E	I	G	V	V	Q	.	.	.	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T
Template Known Secondary structure						T	T				.	.	.				S	S										S	T	T	S		G	G	G																						S						B		T	T	T		S	B				S
Template Predicted Secondary structure											.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		338	.					340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		V	G	.	.	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A	E
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.
Template Conservation
Template Sequence		I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V
Template Known Secondary structure				T	T	T
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions