Phyre 2 alignment of P06986 with d2ay1a

Job Description P06986
Confidence 100.00% Date Thu Jan 5 10:59:42 GMT 2012

Rank 73 Aligned Residues 322

% Identity 17% Template d2ay1a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 2.20

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	24	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.										.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure															.	.	.	.																.	.	.	.	.	.	.	.	.				.																	.	.	.	.	.
Query SS confidence															.	.	.	.																.	.	.	.	.	.	.	.	.				.																	.	.	.	.	.
Query Sequence	R	R	L	G	G	N	G	D	V	W	L	N	A	N	.	.	.	.	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	L	.	.	.	.	.	.	.	.	.	N	R	Y	.	P	E	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	.	.	.	.	.	G	V	K	P	E	Q	V	L	V	S	R	G	A
Query Conservation															.	.	.	.																.	.	.	.	.	.	.	.	.				.																	.	.	.	.	.
Alig confidence															.	.	.	.																.	.	.	.	.	.	.	.	.				.																	.	.	.	.	.
Template Conservation
Template Sequence	R	A	D	P	R	Q	G	K	I	D	L	G	V	G	V	Y	K	D	A	T	G	H	T	P	I	M	R	A	V	H	A	A	E	Q	R	M	L	E	T	E	T	T	K	T	Y	A	G	L	S	G	E	P	E	F	Q	K	A	M	G	E	L	I	L	G	D	G	L	K	S	E	T	T	A	T	L	A	T	V	G	G
Template Known Secondary structure						T	T								S				T	T	S																											S	S															G	G	G			G	G	G
Template Predicted Secondary structure
Template SS confidence
	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.

	85	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure								.	.																																							.	.																.	.	.	.
Query SS confidence								.	.																																							.	.																.	.	.	.
Query Sequence	D	E	G	I	E	L	L	.	.	I	R	A	F	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	.	.	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	.	.	.	.	D	G	V	K	V	V	Y	V	C	S	P	N
Query Conservation								.	.																																							.	.																.	.	.	.
Alig confidence								.	.									.																														.	.																.	.	.	.
Template Conservation																		.
Template Sequence	T	G	A	L	R	Q	A	L	E	L	A	R	M	A	N	P	D	.	L	R	V	F	V	S	D	P	T	W	P	N	H	V	S	I	M	N	F	M	G	L	P	V	Q	T	Y	R	Y	F	D	A	E	T	R	G	V	D	F	E	G	M	K	A	D	L	A	A	A	K	K	G	D	M	V	L	L	H	G	C	C	H
Template Known Secondary structure																T	T	.								S													T											T	T	T	T													T			T	T							S	S	S
Template Predicted Secondary structure																		.
Template SS confidence
	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.						.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																								.																.	.	.	.	.
Query SS confidence																								.																.	.	.	.	.
Query Sequence	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	.	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	.	.	.	.	.	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E
Query Conservation																								.																.	.	.	.	.
Alig confidence																								.																.	.	.	.	.
Template Conservation
Template Sequence	N	P	T	G	A	N	L	T	L	D	Q	W	A	E	I	A	S	I	L	E	K	T	G	A	L	P	L	I	D	L	A	Y	Q	G	F	G	D	G	L	E	E	D	A	A	G	T	R	L	I	A	S	R	I	P	E	V	L	I	A	A	S	C	S	K	N	F	G	I	Y	R	E	R	T	G	C	L	L	A	L	C
Template Known Secondary structure	T	T	T																				T										T	T	S	S	S																	S	S								T	T	T	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
	194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

	231	.	.	.	.	.	.	.	.	240										.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.						.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																			.	.	.	.	.																															.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																			.	.	.	.	.																															.	.	.
Query Sequence	E	V	I	N	L	L	M	K	V	I	.	.	.	.	.	.	.	.	.	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	.	.	.	.	.	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	.	.	.	V	E	Q	V	F
Query Conservation											.	.	.	.	.	.	.	.	.																			.	.	.	.	.																															.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																			.	.	.	.	.																															.	.	.
Template Conservation
Template Sequence	A	D	A	A	T	R	E	L	A	Q	G	A	M	A	F	L	N	R	Q	T	Y	S	F	P	P	F	H	G	A	K	I	V	S	T	V	L	T	T	P	E	L	R	A	D	W	M	A	E	L	E	A	V	R	S	G	M	L	R	L	R	E	Q	L	A	G	E	L	R	D	L	S	G	S	D	R	F	G	F	V	A
Template Known Secondary structure	S	S																	T	T	T	S	S															S																																		T	S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

	294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence	D	S	E	T	N	Y	I	L	A	R	F	K	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A	E	Q	V
Query Conservation																																															.	.
Alig confidence													.																				.	.	.	.	.	.	.	.	.						.	.
Template Conservation													.																				.	.	.	.	.	.	.	.	.
Template Sequence	E	H	R	G	M	F	S	R	L	G	A	T	.	P	E	Q	V	K	R	I	K	E	E	F	G	I	Y	M	V	G	D	S	.	.	.	.	.	.	.	.	.	R	I	N	I	A	G	L	N	D	N	T	I	P	I	L	A	R	A	I	I	E	V	G	V
Template Known Secondary structure				S	S								.																	T	T		.	.	.	.	.	.	.	.	.				G	G	G			T	T	T												T
Template Predicted Secondary structure													.																				.	.	.	.	.	.	.	.	.
Template SS confidence
	355	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.										.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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