Job Description P06986 Confidence 100.00% Date Thu Jan 5 10:59:42 GMT 2012 Rank 14 Aligned Residues 348 % Identity 18% Template c3pplB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Resolution 1.25 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.											.	.	.	.		.	.	.	.	60	.	.	.	.
Predicted Secondary structure																						.	.	.																	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.					.
Query SS confidence																						.	.	.																	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.					.
Query Sequence		V	T	I	T	D	L	A	R	E	N	V	R	N	L	T	P	Y	Q	S	A	.	.	.	R	R	L	G	G	N	G	D	V	W	L	N	A	N	E	Y	.	.	.	.	.	P	T	A	V	E	F	Q	L	T	Q	Q	T	.	.	.	.	.	.	.	.	.	.	L	N	R	Y	.	P	E	C	Q	P	K	A	V	I
Query Conservation																						.	.	.																	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.					.
Alig confidence																						.	.	.																	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.					.
Template Conservation
Template Sequence		V	S	L	Q	D	F	D	A	E	R	I	G	L	F	H	E	D	I	K	R	K	F	D	E	L	K	S	K	N	L	K	L	D	L	T	R	G	K	P	S	S	E	Q	L	D	F	A	D	E	L	L	A	L	P	G	K	G	D	F	K	A	A	D	G	T	D	V	R	N	Y	G	G	L	D	G	I	V	D	I	R
Template Known Secondary structure				G	G	G	S																						T																		T	T	G	G	G	G	G		S		T	T			B		T	T	S		B	T	T	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.															.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation																																																			.
Template Sequence		Q	I	W	A	D	L	L	G	V	P	V	E	Q	V	L	A	G	D	A	S	S	L	N	I	X	F	D	V	I	S	W	S	Y	I	F	G	N	N	D	S	V	Q	P	W	S	K	E	E	T	.	V	K	W	I	C	P	V	P	G	Y	D	R	H	F	S	I	T	E	R	F	G	F	E	X	I	S	V	P	X	N
Template Known Secondary structure									T	S		G	G	G					S	S																			T	T		S	S		G	G	G	S	S		.								S												T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																					.	.																									.											.																				.	.	.	.
Query SS confidence																					.	.																									.											.																				.	.	.	.
Query Sequence		D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	V	.	.	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	.	L	T	R	G	K	A	I	V	V	A	.	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	.	.	.	.
Query Conservation																					.	.																									.											.																				.	.	.	.
Alig confidence																					.	.																									.											.																				.	.	.	.
Template Conservation
Template Sequence		E	D	G	P	D	X	D	A	V	E	E	L	V	K	N	P	Q	V	K	G	X	W	V	V	P	V	F	S	N	P	T	G	F	T	V	T	E	D	V	A	K	R	L	S	A	X	E	T	A	A	P	D	F	R	V	V	W	D	N	A	Y	A	V	H	T	L	T	D	E	F	P	E	V	I	D	I	V	G	L	G
Template Known Secondary structure		T	T											T	T	S	T	T									S	S		T	T	T																		S	S	T	T								T	T	T	T		B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
							203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																												.	.	.	.
Query SS confidence		.	.	.	.	.																																																												.	.	.	.
Query Sequence		.	.	.	.	.	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	.	.	.	.	I	V	A	M	R	E	R	V	A	Q	I	I
Query Conservation		.	.	.	.	.																																																												.	.	.	.
Alig confidence		.	.	.	.	.																.																																												.	.	.	.
Template Conservation																						.
Template Sequence		E	A	A	G	N	P	N	R	F	W	A	F	T	S	T	S	K	I	T	L	.	A	G	A	G	V	S	F	F	L	T	S	A	E	N	R	K	W	Y	T	G	H	A	G	I	R	G	I	G	P	N	K	V	N	Q	L	A	H	A	R	Y	F	G	D	A	E	G	V	R	A	V	X	R	K	H	A	A	S	L	A
Template Known Secondary structure				T	T		T	T								S	T	T	T	S		.	T	T	T	S																							S																S
Template Predicted Secondary structure																						.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		274	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330						.	.	.	.	.	.	.	.	.			340
Predicted Secondary structure														.	.	.	.																					.	.																										.	.	.	.	.										.	.
Query SS confidence														.	.	.	.																					.	.																										.	.	.	.	.										.	.
Query Sequence		A	E	R	E	Y	L	I	A	A	L	K	E	.	.	.	.	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	.	.	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	.	.	.	.	.	S	G	C	L	R	I	T	V	G	.	.	T
Query Conservation														.	.	.	.																					.	.																										.	.	.	.	.										.	.
Alig confidence														.	.	.	.																					.	.																										.	.	.	.	.										.	.
Template Conservation
Template Sequence		P	K	F	N	K	V	L	E	I	L	D	S	R	L	A	E	Y	G	V	A	Q	W	T	V	P	A	G	G	Y	F	I	S	L	D	V	V	P	G	T	A	S	R	V	A	E	L	A	K	E	A	G	I	A	L	T	G	A	G	S	S	Y	P	L	R	Q	D	P	E	N	K	N	L	R	L	A	P	S	L	P	P
Template Known Secondary structure																G	G	G	T								S	B	S	S							S	T	T												T	T						T	T	T	T	S	G	G	G			T	T	S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		341	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	E	S	Q	R	V	I	D	A	L	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	E	L	E	V	A	X	D	G	V	A	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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