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Job DescriptionP06986
Confidence99.57%DateThu Jan 5 10:59:42 GMT 2012
Rank233Aligned Residues287
% Identity14%Templatec3n75E_
PDB info PDB header:lyaseChain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   56...60.........70.........80.........90.........100.........110.........120.........130.....
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Query Sequence  PECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQL
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Template Sequence  HSGPHKEAEQYIARVFNADRS. YMVTNGTSTANKIVGMYSAPAG. STILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYG
Template Known Secondary structure  TBTT
S.SS

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   193......200.........210... ......220.........230..... ....240.........250.........260.........270
 
   136 ...140......... 150.........160.........170.........180.........190......
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Query Sequence  D. . . . . . . . . . . . . LQGISDKLDGVKV. . . VYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASL. . .
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Template Sequence  ILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS. TYDGLLYNT. . . DFIKKTLDVKS. IHFDSAWVPYTNFSPIYEG
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GGGGSSTT

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TTGGGSGGGTT
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   271........280.........290.........300...... ...310..... ....320...... ...330.........340.....
 
   197..200.........210.........220....... ..230.........240.........250.........260.........
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Query Sequence  . . . . AGWLAEYPHLAILRTLSKAFALAGLRCGFTL. . . ANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERV
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Template Sequence  KCGMSGGRVEGKVIYETQSTHL. LAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLI
Template Known Secondary structure  SSTTSS


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   346...350.........360....... ..370.........380.........390.........400.........410.........420....
 
   270.........280...... ...290..... ....300.....
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Query Sequence  AQIIAEREYLIAALKEI. . . . . . PCVEQVFDS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . ETNYILARFK. . . . . . . . .
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Template Sequence  NGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMS
Template Known Secondary structure  SSS


SS
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   426...430.........440.........450.........460.........470.........480.........490.........500.....
 
   306...310.........320.........330......... 340.........350.....
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Query Sequence  . . . . ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG. . . TREESQRVIDALRAEQ
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Template Sequence  DFGIPASIVAKYLDEHGIVVEKTGPY. . . . . NLLFLFSIGIDKTKALSLLRALTDFK
Template Known Secondary structure  SS


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   506...510.........520.........530. ........540.........550.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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