Job Description P06986 Confidence 99.81% Date Thu Jan 5 10:59:42 GMT 2012 Rank 194 Aligned Residues 304 % Identity 18% Template c3n0lA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni Resolution 1.80 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60																.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																							.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	W	L	N	A	N	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	L	.	.	.	.	N	R	Y	P	E	C	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	V	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I
Query Conservation																							.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.										.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation												.	.																																																												.
Template Sequence		L	E	X	I	A	S	E	N	F	T	.	.	L	P	E	V	X	E	V	X	G	S	I	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	F	V	D	E	I	E	T	L	A	I	E	R	C	K	K	L	F	N	C	K	F	A	N	V	Q	P	N	S	G	.	S	Q	A	N	Q	G	V	Y
Template Known Secondary structure						T	T					.	.									T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S		.
Template Predicted Secondary structure												.	.																																																												.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	F	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L
Query Conservation
Alig confidence									.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	L	I	N	P	G	.	D	K	I	L	G	X	D	L	.	.	.	.	.	.	.	.	.	.	.	K	X	Y	E	S	C	F	Y	G	V	E	L	D	G	R	I	D	Y	E	K	V	R	E	I	A	K	K	E	K	P	K	L	I	V	C	G	A	S	A	Y	A	R	V	I	D	F	A	K	F	R	E	I	A
Template Known Secondary structure					S		T	T	.									.	.	.	.	.	.	.	.	.	.	.			S									T	T	S	S																S							S	S			S
Template Predicted Secondary structure									.									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.		.	110	.	.	.	.	.	.												.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		E	L	T	R	G	K	A	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	.	.	.	P	L	S	T	P	V
Query Conservation																																																																									.	.	.
Alig confidence			.	.																													.																		.																						.	.	.
Template Conservation			.	.																													.																		.
Template Sequence		D	.	.	E	I	G	A	Y	L	F	A	D	I	A	H	I	A	G	L	V	V	A	G	E	H	P	S	P	F	P	Y	.	A	H	V	V	S	S	T	T	H	K	T	L	R	G	P	R	G	.	G	I	I	X	T	N	D	E	E	L	A	K	K	I	N	S	A	I	F	P	G	I	Q	G	G	P	L	X	H	V
Template Known Secondary structure			.	.			T								T	T	T						T	T	S	S				T	T	T	.		S						S	S	T	T	T		S		S		.						S													T	T	T	T		S	S
Template Predicted Secondary structure			.	.																													.																		.
Template SS confidence
		186			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.					.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.
Query SS confidence																																																										.	.	.	.
Query Sequence		A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	.	.	.	.	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N
Query Conservation																																																										.	.	.	.
Alig confidence																																																										.	.	.	.
Template Conservation
Template Sequence		I	A	A	K	A	V	G	F	K	F	N	L	S	D	E	W	K	V	Y	A	K	Q	V	R	T	N	A	Q	V	L	A	N	V	L	X	D	R	K	F	K	L	V	S	D	G	T	D	N	H	L	V	L	X	S	F	L	D	R	E	F	S	G	K	D	A	D	L	A	L	G	N	A	G	I	T	A	N	K	N	T
Template Known Secondary structure													T	S																								T	T				G	G	G	S		S	S	S							T	T	S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		326	.						.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure				.	.	.	.	.													.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.													.	.	.	.	.	.	.
Query Sequence		K	Q	.	.	.	.	.	P	S	L	S	G	C	L	R	I	T	V	G	.	.	.	.	.	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A	E
Query Conservation				.	.	.	.	.													.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	G	E	I	R	S	P	F	I	T	S	G	L	R	L	G	T	P	A	L	T	A	R	G	F	K	E	K	E	X	E	I	V	S	N	Y	I	A	D	I
Template Known Secondary structure			T	T			S		T	T	T		S												T	T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions