Job Description P06986 Confidence 100.00% Date Thu Jan 5 10:59:42 GMT 2012 Rank 80 Aligned Residues 340 % Identity 17% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

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		1	.	.	.	.		.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.												.	.	.	.		.	.	.	.	60	.	.	.
Predicted Secondary structure							.																																	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.					.
Query SS confidence							.																																	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.					.
Query Sequence		M	S	T	V	T	.	I	T	D	L	A	R	E	N	V	R	N	L	T	P	Y	Q	S	A	R	R	L	G	G	N	G	D	V	W	L	N	A	N	.	.	.	.	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	.	.	.	.	.	.	.	.	.	.	.	L	N	R	Y	.	P	E	C	Q	P	K	A	V
Query Conservation							.																																	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.					.
Alig confidence							.															.	.																	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																						.	.
Template Sequence		M	S	V	F	S	G	F	P	A	S	P	P	D	A	I	L	N	L	T	V	.	.	L	Y	N	A	D	T	N	P	K	K	V	N	L	G	V	G	A	Y	R	D	E	S	G	K	P	W	I	L	P	A	V	K	E	A	E	A	I	I	S	S	D	L	S	K	Y	N	K	E	Y	P	P	V	A	G	F	P	L	F
Template Known Secondary structure				T	T	T	T								T	T						.	.								T	T					S	S						T	T	S																	S		T	T	T	S			S				T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		64	.	.	.	.	.	70	.							.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.								.	.																		.	.																																		.	.	.	.	.
Query SS confidence										.	.	.	.	.	.								.	.																		.	.																																		.	.	.	.	.
Query Sequence		I	E	N	Y	A	Q	Y	A	.	.	.	.	.	.	G	V	K	P	E	Q	V	.	.	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	.	.	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	.	.	.	.	.
Query Conservation										.	.	.	.	.	.								.	.																		.	.																																		.	.	.	.	.
Alig confidence										.	.	.	.	.	.								.	.																		.	.					.																													.	.	.	.	.
Template Conservation																																																.
Template Sequence		L	E	A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	G	R	I	A	S	C	Q	S	L	S	G	T	G	S	L	H	I	G	F	E	F	L	H	L	W	M	P	K	.	A	E	F	Y	M	P	S	T	T	W	P	N	H	Y	G	I	Y	D	K	V	F	N	K	L	K	V	P	Y	K	E	Y	T	Y
Template Known Secondary structure												T	T						T	T								S																		T	T	.							S	S			T												T	T	T	S
Template Predicted Secondary structure																																																.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
				129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.							.
Predicted Secondary structure		.	.																	.	.	.	.																																				.																.	.	.	.	.	.
Query SS confidence		.	.																	.	.	.	.																																				.																.	.	.	.	.	.
Query Sequence		.	.	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	.	.	.	.	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	.	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	.	.	.	.	.	.	S
Query Conservation		.	.																	.	.	.	.																																				.																.	.	.	.	.	.
Alig confidence		.	.																	.	.	.	.																																				.																.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	K	D	G	E	L	E	I	D	F	S	N	T	K	K	D	I	Q	S	A	P	E	K	S	I	F	L	F	H	A	C	A	H	N	P	S	G	I	D	F	T	E	A	Q	W	K	E	L	L	P	I	M	K	E	K	K	H	I	A	F	F	D	S	A	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A
Template Known Secondary structure		B		T	T	S		S	S	B												S		T	T							S	S	S		T	T	T																				T								S		T	T	T	S	S	S						T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.																		.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	P	V	A	D	I	A	A	Q	A	L	S
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	M	F	V	D	A	G	V	E	V	L	V	A	Q	S	F	S	K	N	F	G	L	Y	G	E	R	I	G	C	L	H	V	V	H	A	G	V	E	G	S	V	E	K	N	K	A	L	S	A	A	M	V	S	G	M	T	L	Q	I	R	K	T	W	S	M	S	A	I	H	G	A	Y	I	V	Q	V	I	V	H
Template Known Secondary structure									T										T	T	T	S			G	G	G											S		S	S	S																					T	T	T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		259	260	.						.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300									.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																																								.	.	.	.	.	.	.	.																		.
Query SS confidence					.	.	.	.	.																																								.	.	.	.	.	.	.	.																		.
Query Sequence		P	Q	G	.	.	.	.	.	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	.	.	.	.	.	.	.	.	L	A	R	F	K	A	S	S	A	V	F	K	S	L	W	D	Q	.	G	I	I	L	R	D	Q
Query Conservation					.	.	.	.	.																																								.	.	.	.	.	.	.	.																		.
Alig confidence					.	.	.	.	.																													.	.										.	.	.	.	.	.	.	.																		.
Template Conservation																																						.	.
Template Sequence		D	K	R	L	L	Q	M	F	Y	D	N	V	K	E	M	S	A	R	I	H	R	M	R	S	L	L	H	A	S	L	A	K	R	K	T	P	.	.	G	P	G	S	K	G	T	W	D	H	I	L	T	A	I	G	M	F	T	F	T	G	L	T	P	E	H	V	D	Y	L	K	E	K	W	S	I	Y	L	V	K	A
Template Known Secondary structure		S																																T	T			.	.		S	T	T	T	T			T							S	S																							B	T	G
Template Predicted Secondary structure																																						.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A
Query Conservation																	.	.
Alig confidence				.	.	.	.	.	.	.	.						.	.
Template Conservation				.	.	.	.	.	.	.	.
Template Sequence		G	G	.	.	.	.	.	.	.	.	R	M	S	M	C	G	L	T	E	S	N	C	D	Y	V	A	E	A	I	H	D
Template Known Secondary structure		G	G	.	.	.	.	.	.	.	.				G	G	G			T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.
Template SS confidence
		396	.									.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions