Job Description P06986 Confidence 99.92% Date Thu Jan 5 10:59:42 GMT 2012 Rank 141 Aligned Residues 285 % Identity 14% Template c3mc6C_ PDB info PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1 Resolution 3.15 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.									.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																		.	.																					.	.	.	.	.	.	.	.
Query SS confidence																		.	.																					.	.	.	.	.	.	.	.
Query Sequence		A	V	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	.	.	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	C	E	.	.	.	.	.	.	.	.	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D
Query Conservation																		.	.																					.	.	.	.	.	.	.	.
Alig confidence																		.	.																					.	.	.	.	.	.	.	.			.
Template Conservation																																																		.
Template Sequence		E	V	V	S	M	V	L	R	M	F	N	A	P	S	D	T	G	C	G	T	T	T	S	G	G	T	E	S	L	L	L	A	C	L	S	A	K	M	Y	A	L	H	H	R	G	I	T	E	.	P	E	I	I	A	P	V	T	A	H	A	G	F	D	K	A	A	Y	Y	F	G	M	K	L	R	H	V	E	L	D	P
Template Known Secondary structure											T	T			T	T	T							S	S																				S			S	S	.							T	T	S											S									B		T
Template Predicted Secondary structure																																																		.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		132	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.								.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure				.																																																.													.	.	.	.	.	.	.
Query SS confidence				.																																																.													.	.	.	.	.	.	.
Query Sequence		N	W	.	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	I	.	V	V	A	D	E	A	Y	I	E	F	C	P	.	.	.	.	.	.	.	Q	A	S	L	A	G	W	L	A	E
Query Conservation				.																																																.													.	.	.	.	.	.	.
Alig confidence				.																															.	.																.													.	.	.	.	.	.	.
Template Conservation																																			.	.
Template Sequence		T	T	Y	Q	V	D	L	G	K	V	K	K	F	I	N	K	N	T	V	L	L	V	G	S	A	P	N	F	P	H	G	I	A	.	.	D	D	I	E	G	L	G	K	I	A	Q	K	Y	K	L	P	L	H	V	D	S	C	L	G	S	F	I	V	S	F	M	E	K	A	G	Y	K	N	L	P	L	L	D	F	R
Template Known Secondary structure		T	T		S	B		T	T	T	T	G	G	G			S	S								T	T		T	T	T				.	.		S		T	T	T	T	T					T	T							T	T	T	T					G	G	G	T	T	T	T			S					S	T	T
Template Predicted Secondary structure																																			.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.														.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	G	V	T	S	I	S	C	D	T	H	K	Y	G	F	A	P	K	G	S	S	V	I	M	Y	R	N	S	D	L	R	M	H	Q	Y	Y	V	N	P	A	W	T	G	G	L	Y	G	S	P	T	L	A	G	S	R	P	G	A	I	V	V	G	C	W	A	T	M	V	N	M	G	E	N	G	Y	I	E	S	C
Template Known Secondary structure		S	T	T								T	T	T	T	T				S	S							S	S					T	T	T	S			B	T	T		T	T	S		B			S	S	S		S	S		B
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.
Predicted Secondary structure																		.																					.	.																																			.	.
Query SS confidence																		.																					.	.																																			.	.
Query Sequence		A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	.	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	.	.	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	.	T	R	E	E	S
Query Conservation																		.																					.	.																																			.	.
Alig confidence																		.																					.	.																			.	.	.	.													.	.
Template Conservation																																																											.	.	.	.
Template Sequence		Q	E	I	V	G	A	A	M	K	F	K	K	Y	I	Q	E	N	I	P	D	L	D	I	M	G	N	P	R	Y	S	V	I	S	F	S	S	K	T	L	N	I	H	E	L	S	D	R	L	S	K	K	G	W	H	F	N	A	.	.	.	.	L	Q	K	P	V	A	L	H	M	A	F	T	R	L	S	A	H	V	V
Template Known Secondary structure																		S		T	T					S				S	S							T	T	T	T										T	T	T		B				.	.	.	.			S	S									T	T	T	T		T
Template Predicted Secondary structure																																																											.	.	.	.
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.					.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		345	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	V	I	D	A	L	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	I	C	D	I	L	R	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions