Job Description P06986 Confidence 99.76% Date Thu Jan 5 10:59:42 GMT 2012 Rank 205 Aligned Residues 345 % Identity 15% Template c3lv2A_ PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin Resolution 2.18 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.														.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.															.	.								.											.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.															.	.								.											.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	T	V	T	I	T	D	L	A	R	E	N	V	R	N	L	T	P	Y	Q	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	L	G	G	N	G	D	V	W	L	N	A	N	.	.	E	Y	P	T	A	V	E	.	F	Q	L	T	Q	Q	T	L	N	R	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.															.	.								.											.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.								.	.	.	.	.	.	.	.	.	.	.	.	.															.	.								.											.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.
Template Sequence		L	T	P	E	Q	I	I	A	V	D	G	A	H	L	.	.	W	H	P	Y	S	P	V	V	A	V	A	A	H	G	A	W	L	T	L	I	R	D	G	Q	P	I	E	V	L	D	A	M	S	S	W	W	T	A	I	H	G	H	G	H	P	A	L	D	Q	A	L	T	T	Q	L	R	V	M	N	H	V	M	F	G
Template Known Secondary structure																.	.														B	T							T	T								T	T					T		T	T		B	S																S				S	S
Template Predicted Secondary structure																.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
			55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure		.																																											.	.	.	.	.	.	.																											.	.	.	.
Query SS confidence		.																																											.	.	.	.	.	.	.																											.	.	.	.
Query Sequence		.	Y	P	E	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	C	.	.	.	.	.	.	.	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	.	.	.	.
Query Conservation		.																																											.	.	.	.	.	.	.																											.	.	.	.
Alig confidence		.																																											.	.	.	.	.	.	.																											.	.	.	.
Template Conservation
Template Sequence		G	L	T	H	E	P	A	A	R	L	A	K	L	L	V	D	I	T	P	A	G	L	D	T	V	F	F	S	D	S	G	S	V	S	V	E	V	A	A	K	M	A	L	Q	Y	W	R	G	R	G	L	P	G	K	R	R	L	M	T	W	R	G	G	Y	H	G	D	T	F	L	A	M	S	I	C	D	P	H	G	G
Template Known Secondary structure		S																	S	S	T	T								S	S																		T	T	T		T	T								T	T					S	S					T	T	S		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
														123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.																		.	.																		.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.																		.	.																		.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	.	.	.	.	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	.	.	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	.	I	V	V	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.																		.	.																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.																		.	.																		.
Template Conservation
Template Sequence		M	H	S	L	W	T	D	V	L	A	A	Q	V	F	A	P	Q	V	P	R	D	Y	D	P	A	Y	S	A	A	F	E	A	Q	L	A	Q	H	A	G	E	L	A	A	V	V	V	E	P	V	V	Q	G	A	G	G	M	R	F	H	D	P	R	Y	L	H	D	L	R	D	I	C	R	R	Y	E	V	L	L	I	F
Template Known Secondary structure		T	G	G	G	T		S	S	S											S	S																	G	G	G								S	S				T	T	T						T													T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.						.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	.	.	.	.	.	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S
Query Conservation																																																									.	.	.	.	.
Alig confidence																												.																													.	.	.	.	.
Template Conservation																												.
Template Sequence		D	E	I	A	T	G	F	G	R	T	G	A	L	F	A	A	D	H	A	G	V	S	P	D	I	M	.	C	V	G	K	A	L	T	G	G	Y	L	S	L	A	A	T	L	C	T	A	D	V	A	H	T	I	S	A	G	A	A	L	M	R	G	P	T	F	M	A	N	P	L	A	C	A	V	S	V	A	S	V	E
Template Known Secondary structure				T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	T	T				S			.				G	G	G	G	T	T	S	S																		S					S			T	T	T	T
Template Predicted Secondary structure																												.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	.	.	.	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R
Query Conservation																																																	.	.	.
Alig confidence																																					.												.	.	.																					.	.	.	.	.	.
Template Conservation																																					.																																			.	.	.	.	.	.
Template Sequence		L	L	L	G	Q	D	W	R	T	R	I	T	E	L	A	A	G	L	T	A	G	L	D	T	A	R	A	L	P	A	V	T	D	V	R	.	V	C	G	A	I	G	V	I	E	C	D	R	P	V	D	L	A	V	A	T	P	A	A	L	D	R	G	V	W	L	R	P	F	R	.	.	.	.	.	.	N	L	V	Y
Template Known Secondary structure					T	S																		G	G	G	G	G	S	T	T						.			S	S							S	S													T	T	T						B	T	.	.	.	.	.	.	T
Template Predicted Secondary structure																																					.																																			.	.	.	.	.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.							.	.	.	.
		336	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.
Predicted Secondary structure						.	.	.													.
Query SS confidence						.	.	.													.
Query Sequence		I	T	V	G	.	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	.	R	A	E	Q
Query Conservation						.	.	.													.
Alig confidence						.	.	.													.
Template Conservation
Template Sequence		A	M	P	P	Y	I	C	T	P	A	E	I	T	Q	I	T	S	A	M	V	E	V	A	R
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions