Job Description P06986 Confidence 100.00% Date Thu Jan 5 10:59:42 GMT 2012 Rank 68 Aligned Residues 342 % Identity 16% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

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		1	.	.	.	.			.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.										.	.	.		.	.	.	.	60	.	.	.	.
Predicted Secondary structure							.	.																																	.	.	.	.																.	.	.	.	.	.	.	.	.				.
Query SS confidence							.	.																																	.	.	.	.																.	.	.	.	.	.	.	.	.				.
Query Sequence		M	S	T	V	T	.	.	I	T	D	L	A	R	E	N	V	R	N	L	T	P	Y	Q	S	A	R	R	L	G	G	N	G	D	V	W	L	N	A	N	.	.	.	.	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	L	.	.	.	.	.	.	.	.	.	N	R	Y	.	P	E	C	Q	P	K	A	V	I
Query Conservation							.	.																																	.	.	.	.																.	.	.	.	.	.	.	.	.				.
Alig confidence							.	.															.	.																	.	.	.	.																.	.	.	.	.	.	.	.	.				.
Template Conservation																							.	.
Template Sequence		M	D	K	L	L	S	S	L	E	N	I	E	V	D	N	I	L	K	T	A	R	.	.	E	F	K	E	D	T	C	E	E	K	I	N	L	S	I	G	V	C	C	N	D	D	G	D	L	H	I	F	D	S	V	L	N	A	D	K	L	V	T	E	N	Y	K	E	K	P	Y	L	L	G	N	G	T	E	D	F	S
Template Known Secondary structure					G	G	G	G															.	.			T	T	S	S		S	S					S		S	S		B		T	T	S	S	B																								T	T	S	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		65	.	.	.	.	70	.							.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.								.	.
Query SS confidence									.	.	.	.	.	.								.	.
Query Sequence		E	N	Y	A	Q	Y	A	.	.	.	.	.	.	G	V	K	P	E	Q	V	.	.	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	W	Q	L	D
Query Conservation									.	.	.	.	.	.								.	.
Alig confidence									.	.	.	.	.	.								.	.
Template Conservation
Template Sequence		T	L	T	Q	N	L	I	F	G	N	N	S	K	Y	I	E	D	K	K	I	C	T	I	Q	C	I	G	G	T	G	A	I	F	V	L	L	E	F	L	K	M	L	N	V	E	T	L	Y	V	T	N	P	P	Y	I	N	H	V	N	M	I	E	S	R	G	F	N	L	K	Y	I	N	F	F	D	Y	N	L	I	D
Template Known Secondary structure											S	S		T	T	T	T	T	T																							T	T	T								S	S											T	T	T											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.							.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.							.	.	.	.	.	200	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																																							.												.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.																																							.												.	.	.	.	.	.
Query Sequence		L	Q	G	I	S	D	K	L	D	.	.	.	.	.	.	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	I	V	V	A	.	D	E	A	Y	I	E	F	C	P	Q	A	.	.	.	.	.	.	S	L	A	G	W	L	A	E	Y
Query Conservation											.	.	.	.	.	.																																							.												.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																																							.												.	.	.	.	.	.
Template Conservation
Template Sequence		I	N	Y	D	L	F	L	N	D	L	R	N	I	P	N	G	S	S	V	I	L	Q	I	S	C	Y	N	P	C	S	V	N	I	E	E	K	Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I	I	F	D	I	A	Y	Q	G	F	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N
Template Known Secondary structure														S		S	S								S	S		T	T	T																												S		T	T	T	S	S	S	S	T	T	G	G	G								T	T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.								230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.								.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Query Sequence		P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	.	.	.	.	.	.	.	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	.	.	.	.	.	.	.	I	V	A	M	R	E	R	V
Query Conservation																												.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	F	S	V	C	Q	S	F	S	K	N	M	S	L	Y	G	E	R	A	G	A	L	H	I	V	C	K	N	Q	E	E	K	K	I	V	F	N	N	L	C	F	I	V	R	K	F	Y	S	S	P	V	I	H	T	N	R	I	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S
Template Known Secondary structure											T	T	T	S			T	T	T	T									S	S																	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.								.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340
Predicted Secondary structure																				.	.	.	.	.	.	.																																																					.	.
Query SS confidence																				.	.	.	.	.	.	.																																																					.	.
Query Sequence		A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	.	.	.	.	.	.	.	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	.	T
Query Conservation																				.	.	.	.	.	.	.																																																					.	.
Alig confidence																				.	.	.	.	.	.	.																				.	.																		.	.	.	.	.	.	.	.	.						.	.
Template Conservation																																														.	.																		.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	I	T	N	N	R	I	L	F	F	N	K	L	E	T	Y	Q	K	K	Y	N	L	N	Y	D	W	N	V	Y	K	K	Q	R	G	L	F	S	F	V	P	L	L	A	.	.	K	I	A	E	H	L	K	T	H	H	I	Y	I	I	N	N	G	.	.	.	.	.	.	.	.	.	R	I	N	V	S	G	I	T
Template Known Secondary structure																			G	G	G	G	T					G	G	G	G	S	S			S	S					G	G	G	G	.	.	G	G	T	T	T	T	T	T	T	T					T	T	S	.	.	.	.	.	.	.	.	.				G	G	G
Template Predicted Secondary structure																																														.	.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.										380	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.		.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		R	E	E	S	Q	R	V	I	D	A	L	.	R	A	E	Q
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		K	N	N	V	D	Y	I	A	D	K	I	C	L	S	L	S
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions