Job Description P06986 Confidence 100.00% Date Thu Jan 5 10:59:42 GMT 2012 Rank 22 Aligned Residues 331 % Identity 18% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.								.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query Sequence		A	R	R	L	G	G	N	G	D	V	W	L	N	A	N	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	P	E	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	.	.	.	.	.	.	.	G	V	K
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Alig confidence																	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		L	Q	R	G	I	K	K	P	F	T	E	V	I	R	A	.	N	P	I	T	F	L	R	Q	V	M	A	L	C	T	Y	P	N	L	L	D	S	P	S	F	P	E	D	A	K	K	R	A	R	R	I	L	Q	A	C	S	Q	G	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D
Template Known Secondary structure				T	T				S	S	S	S		B			.																G	G	G	G	G		S	S	S																		S																T	T	T
Template Predicted Secondary structure																	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																												.	.	.																																		.	.													.	.	.	.
Query SS confidence																												.	.	.																																		.	.													.	.	.	.
Query Sequence		P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	C	E	P	G	K	.	.	.	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	W	.	.	Q	L	D	L	Q	G	I	S	D	K	L	D	.	.	.	.
Query Conservation																												.	.	.																																		.	.													.	.	.	.
Alig confidence																												.	.	.																																		.	.													.	.	.	.
Template Conservation
Template Sequence		P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P	L	Y	S	A	V	I	S	E	L	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D
Template Known Secondary structure		G	G	G					S	S																	G	G	G	S								S			T									T	T									B	G	G	G	T	T	B														T	T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
				146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.													.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.	.																																			.																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																			.																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	.	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	.	.	.	.	.	.	.	.	.	.	.	.	G	W	L	A	E	Y	P	H	L	A	I	L	R
Query Conservation		.	.																																			.																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																			.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H
Template Known Secondary structure		T	S									S	S		T	T	T																				T								T	T	T	T		B			T	T													T						T	T
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		211	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.											260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure								.													.	.	.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence								.													.	.	.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	S	K	A	F	.	A	L	A	G	L	R	C	G	F	T	L	A	.	.	.	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	.	.	.	.	.	.	.	.	.	.	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R
Query Conservation								.													.	.	.																																.	.	.	.	.	.	.	.	.	.
Alig confidence								.													.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L	V	K	L	L	S	V	R	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A
Template Known Secondary structure			S	S	S	S	T	T			S	S	S									S																S															T					T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.																.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.												.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.												.	.
Query Sequence		E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	S	A	V	F	K	S	L	W	D	Q	.	G	I	I	L	R	D	Q	N	K	Q	P	.	.	S	L	S	G	C	L	R	I	T	V
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.												.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.												.	.
Template Conservation
Template Sequence		K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P	L	Q	G	A	M	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	T	Y	H	F	R	M	T	I
Template Known Secondary structure										T	S	T	T								B	S	S																			T	T	S																B					G	G	G	T				T	T			B
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		339		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		G	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A	E
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		L	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions