Phyre 2 alignment of P06986 with c3g7qA

Job Description P06986
Confidence 100.00% Date Thu Jan 5 10:59:42 GMT 2012

Rank 66 Aligned Residues 325

% Identity 17% Template c3g7qA_

PDB info PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.															.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.							.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.															.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.															.	.	.	.	.	.
Query Sequence	N	G	D	V	W	L	N	A	N	E	Y	P	T	A	V	E	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	Q	Q	T	L	N	R	Y	P	E	C	.	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	G	.	.	.	.	.	.	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.															.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.															.	.	.	.	.	.
Template Conservation
Template Sequence	D	G	A	I	X	L	G	G	G	N	P	A	H	I	P	A	X	Q	D	Y	F	Q	T	L	L	T	D	X	V	E	S	G	K	A	A	D	A	L	C	N	Y	D	G	P	Q	G	K	T	A	L	L	N	A	L	A	V	L	L	R	E	T	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A
Template Known Secondary structure							S																									T								S	T	T		T	T	S																						G	G	G					S
Template Predicted Secondary structure
Template SS confidence
	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.

	88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																			.	.																																								.
Query SS confidence																			.	.																																								.
Query Sequence	I	E	L	L	I	R	A	F	C	E	P	G	K	D	A	I	L	Y	.	.	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	.	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N
Query Conservation																			.	.																																								.
Alig confidence													.						.	.																																								.
Template Conservation													.
Template Sequence	F	F	Y	L	F	N	L	F	A	G	R	S	.	T	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	X	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T
Template Known Secondary structure									S	B			.		B					S	S																							G	G	G								G	G	G					T	T								S	S		T	T	T
Template Predicted Secondary structure													.
Template SS confidence
	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	I	.	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence	D	E	E	L	X	K	L	D	R	L	A	N	Q	H	N	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	I	L	C	X	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	N	D	K	T	I	T	A	I	A	N	X	N	G	I	I
Template Known Secondary structure														T	T								T	T		T	T	T	T			B		S								T	T							S	G	G	G	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
	198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.					.	.	.	.	310	.	.
Predicted Secondary structure																													.	.	.	.																.	.	.																				.	.	.	.
Query SS confidence																													.	.	.	.																.	.	.																				.	.	.	.
Query Sequence	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V	A	Q	.	.	.	.	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	.	.	.	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	.	.	.	.	A	S	S	A	V	F	K
Query Conservation																													.	.	.	.																.	.	.																				.	.	.	.
Alig confidence																													.	.	.	.																.	.	.																				.	.	.	.
Template Conservation
Template Sequence	S	L	A	P	G	G	X	G	P	A	X	X	C	E	X	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	Q	T	I	A	I	I	R	R	Y	L	S	E	E	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	E	L	L	Y	Q
Template Known Secondary structure						S												T	T									T																						T	T	T								B	S	S							T	T		S	S
Template Predicted Secondary structure
Template SS confidence
	278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.									.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.													.
Query SS confidence																.	.	.	.	.	.	.	.													.
Query Sequence	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	.	.	.	.	.	.	.	.	P	S	L	S	G	C	L	R	I	T	V	G	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A	E
Query Conservation																.	.	.	.	.	.	.	.													.
Alig confidence																.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence	R	L	K	A	R	G	V	L	X	V	P	G	H	Y	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	X	R	X	N	Y	V	P	E	P	D	K	I	E	A	G	V	K	I	L	A	E	E
Template Known Secondary structure					T	T						G	G	G	G		T	T	B	S	S			G	G	G	G	G						S		S
Template Predicted Secondary structure
Template SS confidence
	358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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