Job Description P06986 Confidence 99.68% Date Thu Jan 5 10:59:42 GMT 2012 Rank 220 Aligned Residues 326 % Identity 15% Template c3fcrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution Resolution 1.80 Å

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		26	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.													.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure														.	.								.											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.								.											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	G	N	G	D	V	W	L	N	A	N	.	.	E	Y	P	T	A	V	E	.	F	Q	L	T	Q	Q	T	L	N	R	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	E	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L
Query Conservation														.	.								.											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.								.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	G	T	K	L	L	D	A	F	A	G	L	Y	C	V	N	V	G	Y	G	R	Q	E	I	A	E	A	I	A	D	Q	A	R	E	L	A	Y	Y	H	S	Y	V	G	H	G	T	E	A	S	I	T	L	A	K	X	I	L	D	R	A	P	K	N	X	S	K	V	Y	F	G	L	G	G	S	D	A	N	E	T
Template Known Secondary structure		T	T							T	T					T			S		B																	S						T	T																	S		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		91	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.														.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	R	A	F	C	.	.	.	.	.	.	.	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	K	L	I	W	Y	Y	N	N	I	L	G	R	P	E	K	K	K	I	I	S	R	W	R	G	Y	H	G	S	G	L	V	T	G	S	L	T	G	L	E	L	F	H	K	K	F	D	L	P	V	E	Q	V	I	H	T	E	A	P	Y	Y	F	R	R	E	D	L	N	Q	T	E	E	Q	F	V	A	H	C	V
Template Known Secondary structure													T	T		T	T								T	T					S	S							S			G	G	G	T	T	T	T	T		S		T	T							S		G	G	G		S		T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
								140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.	.	.	.	.	.																							.	.																			.
Query SS confidence		.	.	.	.	.	.																							.	.																			.
Query Sequence		.	.	.	.	.	.	I	S	D	K	L	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	.	.	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	.	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R
Query Conservation		.	.	.	.	.	.																							.	.																			.
Alig confidence		.	.	.	.	.	.																							.	.																			.																															.
Template Conservation																																																																																	.
Template Sequence		A	E	L	E	A	L	I	E	R	E	G	A	D	T	I	A	A	F	I	G	E	P	I	L	G	T	G	G	I	V	P	P	P	A	G	Y	W	E	A	I	Q	T	V	L	N	K	H	D	I	L	L	V	A	D	E	V	V	T	G	F	G	R	L	G	T	X	F	G	S	D	H	Y	G	L	E	P	D	I	I	.
Template Known Secondary structure													G	G	G								S	S	B	S	T	T	T		B				T	T													T								T	T	T	S	S	S	T	T	S	S	S							T				S			.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240										.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.
Query Sequence		T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	.	.	.	.	.	.	.	.	.	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A
Query Conservation																																.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	A	K	G	L	T	S	A	Y	A	P	L	S	G	S	I	V	S	D	K	V	W	K	V	L	E	Q	G	T	D	E	N	G	P	I	G	H	G	W	T	Y	S	A	H	P	I	G	A	A	A	G	V	A	N	L	K	L	L	D	E	L	N	L	V	S	N	A	G	E	V	G	A	Y	L	N	A	T	X	A
Template Known Secondary structure					G	G	G	T	T	T	S	S																								S		S				T	T	T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.															.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.				340	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Query Sequence		A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	.	.	T	R	E	E	S
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.												.	.	.
Template Conservation																																																												.	.	.
Template Sequence		E	A	L	S	Q	H	A	N	V	G	D	V	R	G	E	G	L	L	C	A	V	E	F	V	K	D	R	D	S	R	T	F	F	D	A	A	D	K	I	G	P	Q	I	S	A	K	L	L	E	Q	D	K	I	I	A	R	A	X	.	.	.	P	Q	G	D	I	L	G	F	A	P	P	F	C	L	T	R	A	E	A
Template Known Secondary structure					T	T	S	T	T							S	S	S								S	B	T	T	T	T	B				G	G	G																						.	.	.	S	S	S	S								T	T
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.				.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		345	.	.	.	.	350	.		.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		Q	R	V	I	D	A	L	.	R	A	E	Q
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		D	Q	V	V	E	G	T	L	R	A	V	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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