Job Description P06986 Confidence 100.00% Date Thu Jan 5 10:59:42 GMT 2012 Rank 77 Aligned Residues 297 % Identity 19% Template c3f6tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Resolution 2.15 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.											.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		N	R	Y	P	E	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	.	.	.	.	.	.	.	.	.	.	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	.	.	.	.	.	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A
Query Conservation																					.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.					.
Template Conservation																																																																.
Template Sequence		N	Y	P	V	P	D	R	C	L	V	N	T	E	K	I	I	N	Y	F	L	Q	E	L	S	Y	K	D	A	N	L	A	E	Q	T	D	L	F	P	T	E	G	G	T	A	A	I	V	Y	A	F	H	S	L	A	E	N	H	L	L	K	K	G	.	D	K	I	A	I	N	E	P	I	F	T	P	Y	L	R	I	P
Template Known Secondary structure		S			S	S	S	S																		T	T	T				G	G	G																							T	T	S	S		T	T	.							S	S							T	S	G
Template Predicted Secondary structure																																																																.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.		.	.	.	.	.	.	190
Predicted Secondary structure																	.	.	.	.	.																																															.						.
Query SS confidence																	.	.	.	.	.																																															.						.
Query Sequence		E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	.	.	.	.	.	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	.	A	I	V	V	A	.	D	E	A	Y	I	E	F
Query Conservation																	.	.	.	.	.																																															.						.
Alig confidence																	.	.	.	.	.																																															.						.
Template Conservation
Template Sequence		E	L	K	D	Y	E	L	V	E	V	D	L	H	S	Y	E	K	N	D	W	E	I	E	P	N	E	I	E	K	L	K	D	P	S	I	K	A	L	I	V	V	N	P	T	N	P	T	S	K	E	F	D	T	N	A	L	N	A	I	K	Q	A	V	E	K	N	P	K	L	X	I	I	S	D	E	V	Y	G	A	F
Template Known Secondary structure		G	G	G	G	S											T	T	T	T	S											S		T	T								S	S		T	T	T		B																		T	T								T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.														.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	L	M	K	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																					.
Template Sequence		V	P	N	.	F	K	S	I	Y	S	V	V	P	Y	N	T	X	L	V	Y	S	Y	S	L	.	F	G	C	T	G	W	R	L	G	V	I	A	L	N	E	K	N	V	F	D	D	N	I	A	H	L	D	K	V	E	L	R	Q	L	H	K	R	Y	S	S	V	V	L	D	P	D	K	X	K	F	I	D	R	L	C
Template Known Secondary structure		S	T	T	.								S	G	G	G										.		S		G	G	G									S	S									T	S														T	T		S		G	G	G
Template Predicted Secondary structure					.																					.
Template SS confidence
		290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
																																					258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																																																.	.
Template Sequence		A	D	S	R	S	I	G	L	Y	H	T	A	G	L	S	T	P	Q	Q	I	X	E	A	L	F	S	X	T	H	L	L	T	S	T	N	G	G	S	D	D	P	Y	I	D	I	A	R	K	L	V	S	E	R	Y	D	Q	L	H	D	A	X	Q	.	.	A	P	K	D	E	T	D	T	N	T	H	Y	Y	S	L	I
Template Known Secondary structure					T	T	T	T	T	G	G	G		S																		T	T		B	G	G	G	T	B																							T	.	.						S	T	T	B			S
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430			.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		303	.																				.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																							.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																							.	.
Query Sequence		R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	S	S	A	V	F	K	S	L	W	D	Q	.	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A	E
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																							.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																							.	.
Template Conservation
Template Sequence		D	I	Y	R	L	A	E	K	I	Y	G	K	E	F	R	D	Y	L	T	N	N	F	E	Q	V	D	F	L	L	K	L	A	E	K	N	G	V	V	L	V	D	G	V	G	F	G	A	K	P	G	E	L	R	V	S	Q	A	N	L	P	T	E	D	Y	A	L	I	G	K	Q	V	L	E	L
Template Known Secondary structure																																				T	T	S	S	S		T	T					S	S	T	T						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions