Job Description P06986 Confidence 99.97% Date Thu Jan 5 10:59:42 GMT 2012 Rank 85 Aligned Residues 332 % Identity 16% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.														60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	I	T	D	L	A	R	E	N	V	R	N	L	T	P	Y	Q	S	A	R	R	L	G	G	N	G	D	V	W	L	N	A	N	E	Y	P	T	A	V	E	.	.	F	Q	L	T	Q	Q	T	L	N	R	Y	P	E	C	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	A	V	I	E	N	Y	A
Query Conservation																																											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.										.	.	.	.	.	.	.	.	.	.																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.										.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	V	A	R	.	V	R	G	L	H	P	S	L	G	.	.	.	.	.	.	.	.	.	.	D	G	W	V	H	F	D	A	P	A	G	M	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A
Template Known Secondary structure							.				T		T	T	T	T	.	.	.	.	.	.	.	.	.	.	S	S					B	G	G	G																					S	S	S		S	S	S
Template Predicted Secondary structure							.										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.		.	.	10	.	.	.	.	.	.											.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.
Predicted Secondary structure																													.	.	.																	.	.	.	.																								.	.
Query SS confidence																													.	.	.																	.	.	.	.																								.	.
Query Sequence		Q	Y	A	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	.	.	.	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	.	.	.	.	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	W	Q	.	.	L	D	L	Q	G
Query Conservation																													.	.	.																	.	.	.	.																								.	.
Alig confidence																													.	.	.					.												.	.	.	.																								.	.
Template Conservation																																				.
Template Sequence		D	L	V	N	A	D	P	G	G	V	V	L	G	A	D	R	A	V	L	L	S	L	L	A	E	A	S	S	S	R	A	G	L	G	.	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	T	G	E	L	P	T	W	Q	W
Template Known Secondary structure					T			G	G	G					S													T	G	G	G	G	B	T	T	.							T	T	S		G	G	G	T											B										T	T	T					G	G	G
Template Predicted Secondary structure																																				.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	D	K	L	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A
Query Conservation
Alig confidence																																				.	.														.	.	.	.
Template Conservation																																				.	.														.	.	.	.
Template Sequence		E	S	L	I	S	K	S	T	R	L	V	A	V	N	S	A	S	G	T	L	G	G	V	T	D	L	R	A	M	T	K	L	V	H	.	.	D	V	G	A	L	V	V	V	D	H	S	A	A	.	.	.	.	A	P	Y	R	L	L	D	I	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P	P
Template Known Secondary structure							T	T								S	B		T	T	T		B	B												.	.		T	T								T	T	T	.	.	.	.	T	T	T											S						G	G	G	G	T	S		S
Template Predicted Secondary structure																																				.	.														.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.											.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.																260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	.	.	.	.	.	.	.	.	.	.	M	K	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.														.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.
Template Sequence		I	G	.	.	A	M	V	F	R	D	P	S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R
Template Known Secondary structure				.	.					S							T	S					S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S
Template Predicted Secondary structure				.	.
Template SS confidence
		225	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.									.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.										.	.																							.	.	.	.	.	.	.	.													.	.	.
Query SS confidence																								.	.										.	.																							.	.	.	.	.	.	.	.													.	.	.
Query Sequence		E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	.	.	T	N	Y	I	L	A	R	F	K	.	.	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	.	.	.	.	.	.	.	.	P	S	L	S	G	C	L	R	I	T	V	G	.	.	.
Query Conservation																								.	.										.	.																							.	.	.	.	.	.	.	.													.	.	.
Alig confidence																								.	.										.	.																							.	.	.	.	.	.	.	.													.	.	.
Template Conservation
Template Sequence		V	F	D	Y	L	M	V	S	L	R	S	L	P	L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	K	V	P	A	D	R	V	V	Q	R	L	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A	H	Y	S
Template Known Secondary structure												T		T	T								S	S	B		S							T	T	B												T	T								S								T	T	T	T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	E	E	S	Q	R	V	I	D	A	L	R	A	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	M	A	E	V	D	Q	L	V	R	A	L	A	S	L	G
Template Known Secondary structure															T
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions