Job Description P06986 Confidence 99.75% Date Thu Jan 5 10:59:42 GMT 2012 Rank 208 Aligned Residues 318 % Identity 16% Template c3bs8A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis Resolution 2.30 Å

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		26	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.									.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure														.	.						.												.	.	.	.	.	.	.	.
Query SS confidence														.	.						.												.	.	.	.	.	.	.	.
Query Sequence		L	G	G	N	G	D	V	W	L	N	A	N	.	.	E	Y	P	T	A	.	V	E	F	Q	L	T	Q	Q	T	L	N	.	.	.	.	.	.	.	.	R	Y	P	E	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A
Query Conservation														.	.						.												.	.	.	.	.	.	.	.
Alig confidence														.	.						.												.	.	.	.	.	.	.	.																				.
Template Conservation																																																												.
Template Sequence		I	D	G	N	E	Y	I	D	Y	V	L	S	W	G	P	L	I	L	G	H	T	N	D	R	V	V	E	S	L	K	K	V	A	E	Y	G	T	S	F	G	A	P	T	E	V	E	N	E	L	A	K	L	V	I	D	R	V	P	.	S	V	E	I	V	R	M	V	S	S	G	T	E	A	T	M	S	A	L	R	L
Template Known Secondary structure		T	T							S	S	G	G	G	T	T		T	T		B	S																S			S	S																S	T	.	T		S						S
Template Predicted Secondary structure																																																												.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		95	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure					.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	C	E	.	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	V	V	Y	V	C
Query Conservation					.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	G	Y	T	G	R	N	K	I	L	K	F	E	G	C	Y	H	G	H	G	D	S	L	L	I	K	A	G	S	G	V	A	T	L	G	L	P	D	S	P	G	V	P	E	G	I	A	K	N	T	I	T	V	P	Y	N	D	L	E	S	V	K	L	A	F	Q	Q	F	G	E	D	I	A	G	V	I	V	E	P
Template Known Secondary structure							T									T					S		G	G	G						S	S	S	S		B				S	S	T	T			T	T	S	S	T	T						T	T													G	G	G								S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	.	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V
Query Conservation																												.
Alig confidence																												.																														.	.								.
Template Conservation																																																										.	.								.
Template Sequence		V	A	G	N	M	G	V	V	P	P	Q	E	G	F	L	Q	G	L	R	D	I	T	E	Q	Y	G	S	L	L	I	F	D	E	V	M	T	G	F	R	V	D	Y	N	C	A	Q	G	Y	F	G	V	T	P	D	L	T	.	.	C	L	G	K	V	I	G	.	G	G	L	P	V	G	A	Y	G	G	K	A	E	I
Template Known Secondary structure		S	B		S	S	S		B				T	T													T								T	T	T	T	T	T	T	S	T	T						T	T				S			.	.				G	G	G	G	.	T	T	S	S
Template Predicted Secondary structure																																																										.	.								.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.
		233	.	.	.	.						.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		I	N	L	L	M	.	.	.	.	.	K	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	A	S
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.																																																													.
Template Conservation																																																																								.
Template Sequence		M	E	Q	I	A	P	S	G	P	I	Y	Q	A	G	T	L	S	G	N	P	L	A	M	T	A	G	L	E	T	L	K	Q	L	T	P	D	S	Y	K	N	F	I	K	K	G	D	R	L	E	E	G	I	S	K	A	A	E	A	H	G	I	P	H	T	F	N	R	A	G	S	.	M	I	G	F	F	F	T	N	E
Template Known Secondary structure			T	T	B	T	T	T	S	S	B					S	S	T	T														T																											T	T									T	T	.						S	S	S	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.
																		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.								.
Template Conservation																																						.	.	.	.	.
Template Sequence		P	V	I	N	Y	E	T	A	K	A	S	D	L	K	L	F	A	S	Y	Y	K	G	M	A	N	E	G	V	F	L	P	P	S	Q	F	E	.	.	.	.	.	G	L	F	L	S	T	A	H	T	D	E	D	I	E	N	T	I	Q	A	A	E	K
Template Known Secondary structure					S					T	T	S															T	T					S	S	S	S	S	.	.	.	.	.		B				T	T
Template Predicted Secondary structure																																						.	.	.	.	.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400						.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions