Job Description P06986 Confidence 99.89% Date Thu Jan 5 10:59:42 GMT 2012 Rank 158 Aligned Residues 287 % Identity 18% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.
Query SS confidence																																																															.	.	.	.
Query Sequence		L	N	R	Y	P	E	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	.	.	.	.	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V
Query Conservation																																																															.	.	.	.
Alig confidence																							.	.																										.													.	.	.	.
Template Conservation																							.	.																										.
Template Sequence		Y	S	R	L	G	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	G	.	.	A	A	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	L	A	F	L	Q	K	G	.	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I
Template Known Secondary structure		B	T	T	T																	T	.	.		S						S	S										T	T	T			T	T	.							S	S																T	T
Template Predicted Secondary structure																							.	.																										.
Template SS confidence
		1553	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.			.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.		.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A
Query Conservation
Alig confidence						.	.	.	.																																							.	.														.	.	.	.	.
Template Conservation						.	.	.	.																																							.	.														.	.	.	.	.
Template Sequence		D	T	S	D	.	.	.	.	V	E	K	V	K	A	A	W	K	P	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	I	K	G	I	A	V	V	C	H	.	.	E	R	G	A	R	L	V	V	D	A	T	F	T	.	.	.	.	.	S	P	C	F	L	K	P	L	E	L	G	A	D	I
Template Known Secondary structure			T	T	S	.	.	.	.										T	T								S	S		T	T	T															.	.			T								T	T	T	.	.	.	.	.		T	T	T			G	G	G	G	T		S
Template Predicted Secondary structure						.	.	.	.																																							.	.														.	.	.	.	.
Template SS confidence
		1630	.	.	.					.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.			.	.	.	.	.	.	.	.	1680	.	.	.	.						.	.	.	.	.	1690	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	.	.	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E
Query Conservation																							.	.
Alig confidence																							.	.																																		.	.	.
Template Conservation																																																										.	.	.
Template Sequence		A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	M	A	P	M	D	A	F	L	C	A	R	G	M	K	T	.	.	.	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q
Template Known Secondary structure						T	T	T	T	T	T		S	S	S									S	S																															T	T	.	.	.																					T
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		1699	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.				.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.																		.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	P	C	V	E	Q	V	F	D	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	Y	I	L	A	R	F	K	A	.	.	.	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	E	K	I	V	K	V	N	H	P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	K	S	F	E	A	A	K	K	L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I
Template Known Secondary structure			T	T							T	T	S	T	T	S	T	T									S	S			S							S	S									T	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		1776	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.
									331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																						.
Query SS confidence		.	.	.	.	.	.	.																						.
Query Sequence		.	.	.	.	.	.	.	S	G	C	L	R	I	T	V	G	T	R	E	E	S	Q	R	V	I	D	A	L	.	R	A	E	Q	V
Query Conservation		.	.	.	.	.	.	.																						.
Alig confidence		.	.	.	.	.	.	.											.											.
Template Conservation																			.
Template Sequence		M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	G	I	.	E	N	V	D	D	I	I	A	D	L	K	Q	A	L	E	L
Template Known Secondary structure						T			T	T								S	.	S
Template Predicted Secondary structure																			.
Template SS confidence
		1856	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.		.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions