Phyre 2 alignment of P06986 with c2yrrA

Job Description P06986
Confidence 99.95% Date Thu Jan 5 10:59:42 GMT 2012

Rank 100 Aligned Residues 319

% Identity 15% Template c2yrrA_

PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class v; PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8

Resolution 1.86 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.								60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																														.	.	.	.	.	.	.																			.	.
Query SS confidence																														.	.	.	.	.	.	.																			.	.
Query Sequence	D	V	W	L	N	A	N	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	L	N	R	Y	P	E	C	Q	.	.	.	.	.	.	.	P	K	A	V	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	.	.	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	C	E	P	G	K	D
Query Conservation																														.	.	.	.	.	.	.																			.	.
Alig confidence								.	.																					.	.	.	.	.	.	.																			.	.																							.
Template Conservation								.	.																																																																						.
Template Sequence	M	L	L	L	T	P	G	.	.	P	T	P	I	P	E	R	V	Q	K	A	L	L	R	P	M	R	G	H	L	D	P	E	V	L	R	V	N	R	A	I	Q	E	R	L	A	A	L	F	D	P	G	E	G	A	L	V	A	A	L	A	G	S	G	S	L	G	M	E	A	G	L	A	N	L	D	R	G	P	.	V
Template Known Secondary structure					S	S	S	.	.	S									G	G	G	G	S					T	T																							T	T							S	S												T		S				.
Template Predicted Secondary structure								.	.																																																																						.
Template SS confidence
	1	.	.	.	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.

	102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	.	.	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A
Query Conservation																																												.	.
Alig confidence																																												.	.
Template Conservation
Template Sequence	L	V	L	V	N	G	A	F	S	Q	R	V	A	E	M	A	A	L	H	G	L	D	P	E	V	L	D	F	P	P	G	E	P	V	D	P	E	A	V	A	R	A	L	K	R	R	R	Y	R	M	V	A	L	V	H	G	E	T	S	T	G	V	L	N	P	A	E	A	I	G	A	L	A	K	E	A	G	A	L	F
Template Known Secondary structure						S													T	T										T	T	S														S			S						S			T	T	T	T																T
Template Predicted Secondary structure
Template SS confidence
	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

	180	.	.	.	.	.	.	.	.	.	190	.	.	.											.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.
Query Sequence	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	.	.	.	.	.	.	.	.	.	.	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	P	L	S	T	P	V
Query Conservation															.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	F	L	D	A	V	T	T	L	G	M	L	P	F	S	M	R	A	M	G	V	D	Y	A	F	T	G	S	Q	K	C	L	S	A	P	P	G	L	A	P	I	A	A	S	L	E	A	R	K	A	F	T	G	K	R	G	W	Y	L	D	L	A	R	V	A	E	H	W	E	R	G	G	Y	H	H	T	T	P	V	L	L
Template Known Secondary structure					T	T	T	T	T	T	S								T		S						T	T	S	T	T				S	S																		S		S	T	T										T	T				S	S
Template Predicted Secondary structure
Template SS confidence
	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.				.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																																		.								.	.	.
Query SS confidence																																																		.								.	.	.
Query Sequence	A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	.	Y	I	L	A	R	F	K	.	.	.	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N
Query Conservation																																																		.								.	.	.
Alig confidence																																																		.								.	.	.
Template Conservation
Template Sequence	H	Y	A	L	L	E	A	L	D	L	V	L	E	E	G	V	A	A	R	E	R	R	A	R	E	V	Y	A	W	V	L	E	E	L	K	A	R	G	F	R	P	Y	P	K	A	S	P	L	P	T	V	L	V	V	R	P	P	E	G	V	D	A	D	R	L	V	R	A	L	Y	A	E	G	V	A	V	A	G	G	I
Template Known Secondary structure																																					T	T				S		S	S	S	B		T	T								T	T													T	T
Template Predicted Secondary structure
Template SS confidence
	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

	326	.	.	.	330	.	.	.	.	.	.	.		.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure													.			.	.	.
Query SS confidence													.			.	.	.
Query Sequence	K	Q	P	S	L	S	G	C	L	R	I	T	.	V	G	.	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A
Query Conservation													.			.	.	.
Alig confidence			.										.			.	.	.
Template Conservation			.
Template Sequence	G	P	.	T	R	G	Q	V	L	R	L	G	L	M	G	E	G	A	R	R	E	A	Y	Q	A	F	L	K	A	L	D	R
Template Known Secondary structure	G	G	.	G	T	T	T							S	G	G	G	S
Template Predicted Secondary structure			.
Template SS confidence
	318	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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