Job Description P06986 Confidence 100.00% Date Thu Jan 5 10:59:42 GMT 2012 Rank 70 Aligned Residues 320 % Identity 18% Template c2x5fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase Resolution 1.80 Å

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		28	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.								50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.									.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.													.	.	.	.	.	.	.							.																	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.													.	.	.	.	.	.	.							.																	.	.	.	.	.	.	.	.
Query Sequence		G	N	G	D	V	W	L	N	A	N	.	.	.	.	E	Y	P	T	A	V	E	F	Q	L	T	Q	.	.	.	.	.	.	.	Q	T	L	N	R	Y	.	P	E	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	.	.	.	.	.	.	.	.	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G
Query Conservation												.	.	.	.													.	.	.	.	.	.	.							.																	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.													.	.	.	.	.	.	.							.																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	T	T	Y	N	A	T	I	G	M	A	T	N	K	D	G	K	M	F	A	S	S	L	D	A	M	F	N	D	L	T	P	D	E	I	F	P	Y	A	P	P	Q	G	I	E	E	L	R	D	L	W	Q	Q	K	M	L	R	D	N	P	E	L	S	I	D	N	M	S	R	P	I	V	T	N	A	L	T	H	G
Template Known Secondary structure		T	T	S	S	S					S	S				T	T										T	T		S	S			G	G	G	T	S	S				T	T																		T	T			G	G	G	B							S
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																				.									.																				.	.	.	.
Query SS confidence																																				.									.																				.	.	.	.
Query Sequence		I	E	L	L	I	R	A	F	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	.	V	E	C	R	T	V	P	T	.	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	.	.	.	.	V	V	Y	V	C	S	P	N	N	P	T	G	Q
Query Conservation																																				.									.																				.	.	.	.
Alig confidence														.																						.									.																				.	.	.	.
Template Conservation														.
Template Sequence		L	S	L	V	G	D	L	F	V	N	Q	D	.	D	T	I	L	L	P	E	H	N	W	G	N	Y	K	L	V	F	N	T	R	N	G	A	N	L	Q	T	Y	P	I	F	D	K	D	G	H	Y	T	T	D	S	L	V	E	A	L	Q	S	Y	N	K	D	K	V	I	M	I	L	N	Y	P	N	N	P	T	G	Y
Template Known Secondary structure												T	T	.							S	S			T							T	T	T	T										B		T	T	S		B		S												S	S								S	S		T	T	T
Template Predicted Secondary structure														.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.						.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200									.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.							.																		.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.							.																		.	.	.	.	.	.	.	.
Query Sequence		L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	.	.	.	.	.	K	A	I	V	V	A	.	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	.	.	.	.	.	.	.	.	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L
Query Conservation																		.	.	.	.	.							.																		.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.							.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	T	H	K	E	V	T	T	I	V	E	A	I	K	A	L	A	N	K	G	T	K	V	I	A	V	V	D	D	A	Y	Y	G	L	F	Y	E	D	V	Y	T	Q	S	L	F	T	A	L	T	N	L	H	S	N	A	I	L	P	I	R	L	D	G	A	T	K	E	F	F	A	W	G	F	R	V	G	F	M	T
Template Known Secondary structure																					T	T										T	T	T	T		B		S	S				S								T	T			T	T													T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
					228	.	230	.	.	.	.	.	.	.	.	.							240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.
Predicted Secondary structure		.	.	.													.	.	.	.	.	.																						.	.																										.	.	.
Query SS confidence		.	.	.													.	.	.	.	.	.																						.	.																										.	.	.
Query Sequence		.	.	.	A	N	E	E	V	I	N	L	L	M	K	V	.	.	.	.	.	.	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	.	.	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	.	.	.	I	P	C	V	E	Q	V	F
Query Conservation		.	.	.													.	.	.	.	.	.																						.	.																										.	.	.
Alig confidence		.	.	.													.	.	.	.	.	.																						.	.																										.	.	.
Template Conservation
Template Sequence		F	G	T	S	D	Q	T	T	K	E	V	L	E	A	K	V	K	G	L	I	R	S	N	I	S	S	G	P	L	P	T	Q	S	A	V	K	H	V	L	K	N	N	K	Q	F	D	K	E	I	E	Q	N	I	Q	T	L	K	E	R	Y	E	V	T	K	E	V	V	Y	A	D	Q	Y	H	S	H	W	Q	A	Y	D
Template Known Secondary structure			B																				T	T	T	S	S													T	T	T																											T		G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		294	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure														.	.											.																									.	.
Query SS confidence														.	.											.																									.	.
Query Sequence		D	S	E	T	N	Y	I	L	A	R	F	K	.	.	A	S	S	A	V	F	K	S	L	W	.	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A
Query Conservation														.	.											.																									.	.
Alig confidence														.	.											.													.	.	.	.	.								.	.
Template Conservation																																							.	.	.	.	.
Template Sequence		F	N	S	G	Y	F	M	A	I	K	V	H	D	V	D	P	E	A	L	R	K	H	L	I	D	K	Y	S	I	G	V	I	A	L	N	A	T	.	.	.	.	.	D	I	R	I	A	F	S	C	V	E	K	D	D	I	P	H	V	F	D	S	I	A	K
Template Known Secondary structure				B	S	S							S	S	S													T								S	S	S	.	.	.	.	.						G	G	G	S		G	G	G
Template Predicted Secondary structure																																							.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.						400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions