Job Description P06986 Confidence 99.67% Date Thu Jan 5 10:59:42 GMT 2012 Rank 222 Aligned Residues 283 % Identity 12% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	V	I	E	N	Y	A	Q	Y	A	G	V	.	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	C	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I
Query Conservation															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K	K	S	H	F	T	V	Q	K	S	A	S	W	X
Template Known Secondary structure												T	T			T	T							S	S																														S		T	T	G	G	G							T	T	S		T									T
Template Predicted Secondary structure
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
		121	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure				.	.	.																											.	.	.	.	.	.	.
Query SS confidence				.	.	.																											.	.	.	.	.	.	.
Query Sequence		G	V	.	.	.	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	.	.	.	.	.	.	.	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	I	V	V	A	D	E	A	Y	I	E	F
Query Conservation				.	.	.																											.	.	.	.	.	.	.
Alig confidence				.	.	.																											.	.	.	.	.	.	.																										.	.
Template Conservation																																																																	.	.
Template Sequence		G	L	G	E	K	A	V	X	T	V	D	A	N	A	D	G	T	X	D	I	T	K	L	D	E	V	I	A	Q	A	K	A	E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	L	D	F	I	A	D	X	A	V	.	.	K	H	D	X	W	X	H	V	D	G	A	Y	G	G	A
Template Known Secondary structure		T	S		G	G	G						B		T	T	S		B															T	T										B	S		T	T	T			B												.	.			T								T	T	G	G	G
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.			.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	.	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V
Query Conservation																		.
Alig confidence																		.																													.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.
Template Sequence		L	I	L	S	S	H	K	S	R	L	K	G	V	E	R	A	H	S	I	S	V	D	F	H	K	L	F	Y	Q	T	I	S	C	G	A	L	L	V	N	D	K	S	N	F	K	.	.	.	.	.	.	.	.	F	L	L	K	R	F	D	A	L	K	V	F	X	T	X	Q	N	V	G	P	K	A	L	G	D	X	Y
Template Known Secondary structure		G	G	G	S	T	T	G	G	G	G	T	T	G	G	G		S						T	T	S	T	T				S	S							S		G	G	G	G	G	.	.	.	.	.	.	.	.	G	G					T											T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Template SS confidence
		762	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.									.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.									.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.																																	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.																																	.	.
Query Sequence		A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	A	S	.	.	.	.	.	.	.	.	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	.
Query Conservation																																								.	.	.	.	.	.	.	.																																	.	.
Alig confidence																																								.	.	.	.	.	.	.	.																								.									.	.
Template Conservation																																																																							.
Template Sequence		D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	D	Q	F	E	L	L	A	E	P	S	L	S	T	V	L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	A	L	R	L	E	A	L	T	R	G	I	A	V	L	G	E	T	I	V	D	G	K	.	T	A	L	K	F	T	I	L	N	P
Template Known Secondary structure																	T		T	T					S			S	S	S									S	S	S																	T	S		B							T	T		.										T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		858	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.		.	.	.	930	.	.	.	.	.	.
				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A	E
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		C	L	T	T	S	D	F	E	S	L	L	S	K	I	N	X	L
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		937	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions