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Job DescriptionP06986
Confidence99.82%DateThu Jan 5 10:59:42 GMT 2012
Rank190Aligned Residues293
% Identity10%Templatec2okkA_
PDB info PDB header:lyaseChain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70........ .80.........90.... .....100.........110.........120..
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Query Sequence  KAVIENYAQYAGVKPEQV. . LVSRGADEGIELLIRA. . . . . . . . . . . . . FCEPGKDAILYCPPTYGMYSVSAETIGV. . .
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Template Sequence  YVTLKKMREIIGWPGGSGDGIFSPGGAISNMYAMMIARFKMFPEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTD
Template Known Secondary structure  T
GGG
SSS
TT
GGGS

TTS
TTTS
GG
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   218.220.........230.........240.........250.........260.........270.........280.........290.......
 
   123......130.........140........ .150.........160.........170.........180.........190. ...
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Query Sequence  ECRTVPTLDNWQLDLQGISDKLDGVK. . . . . . . VVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFC. PQA
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Template Sequence  SVILIKCDERGKMIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAFDPLLAVADICK. . KYKIWMHVDAAWGGGLLMSR
Template Known Secondary structure  G
B
TTS
B
TT
BS
TTT

B

..T
TTGGGGGG
T
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   298.300.........310.........320.........330.........340.........350..... ....360.........370.....
 
   195....200.........210.........220.........230.........240... ......250.........260.....
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Query Sequence  SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY. . . . . . . . . PLSTPVADIAAQALSPQGIVAM
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Template Sequence  KHKWKLSGVERANSVTWNPHMMGVPLQCSALLVREEGLMQNCNQMHDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGF
Template Known Secondary structure  TTGGGGTTGGG
S






SS

SSTT



GGG

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   376...380.........390.........400.........410.........420.........430.........440.........450.....
 
   266...270.........280.........290...... ...300...... ...310.........320.......
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Query Sequence  RERVAQIIAEREYLIAALKEIPCVEQVFDSE. . TNYILARFKA. . . . . . . . . . . . . . . . SSAVFKSLWDQGIILRDQNKQ
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Template Sequence  EAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTNVCFWYIPPSLRTLEERMSRLSKVAPVIKARMMEYGTTMVSYQPL
Template Known Secondary structure  TSTTSSSS

SSS


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   468.470.........480.........490.........500.........510.........520.........530.........540.......
 
   328.330......... 340.........350.....
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Query Sequence  PSLSGCLRITVG. . . . TREESQRVIDALRAEQ
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Template Sequence  GDKVNFFRMVISNPAATHQDIDFLIEEIERLG
Template Known Secondary structure  TT



TT


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   551........560.........570.........580..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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