Job Description P06986 Confidence 99.94% Date Thu Jan 5 10:59:42 GMT 2012 Rank 122 Aligned Residues 314 % Identity 19% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.																.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																							.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	W	L	N	A	N	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	L	.	.	.	.	N	R	Y	P	E	C	Q	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I
Query Conservation																							.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.											.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation											.	.																																																													.
Template Sequence		L	E	L	I	A	S	E	N	F	.	.	V	S	K	Q	V	R	E	A	V	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	A	R	Y	Y	G	G	C	E	V	I	D	R	V	E	S	L	A	I	E	R	A	K	A	L	F	G	A	A	W	A	N	V	Q	P	H	S	G	.	S	Q	A	N	M	A	V	Y
Template Known Secondary structure						T	T				.	.										T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S		.
Template Predicted Secondary structure											.	.																																																													.
Template SS confidence
		26	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																						.	.	.
Query SS confidence																					.	.	.																						.	.	.
Query Sequence		R	A	F	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	.	.	.	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	.	.	.	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q
Query Conservation																					.	.	.																						.	.	.
Alig confidence									.												.	.	.																						.	.	.
Template Conservation									.
Template Sequence		M	A	L	M	E	P	G	.	D	T	L	M	G	M	D	L	A	A	G	G	H	L	T	H	G	S	R	V	N	F	S	G	K	L	Y	K	V	V	S	Y	G	V	R	P	D	T	E	L	I	D	L	E	E	V	R	R	L	A	L	E	H	R	P	K	V	I	V	A	G	A	S	A	Y	P	R	F	W	D	F	K
Template Known Secondary structure							T	T	.								G	G	G	T			G	G	G	T		T	T	S						S									T	T	T		S																S							S	S			S
Template Predicted Secondary structure									.
Template SS confidence
		103	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		D	F	R	T	L	L	E	L	T	R	G	K	A	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence									.	.																												.															.																										.	.	.
Template Conservation									.	.																												.															.
Template Sequence		A	F	R	E	I	A	D	.	.	E	V	G	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	N	P	L	P	.	Y	A	H	V	V	T	S	T	T	H	K	T	L	R	.	G	P	R	G	G	L	I	L	S	N	D	P	E	L	G	K	R	I	D	K	L	I	F	P	G	I	Q	G
Template Known Secondary structure									.	.			T								T	T	T						T	T	S	S				T	T	.	T		S						S	S	G	G	G		.			S							S													T	T	T	T		S
Template Predicted Secondary structure									.	.																												.															.
Template SS confidence
		182	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.					.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.
Query SS confidence																																																																.	.	.	.
Query Sequence		P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	.	.	.	.	A	S	S	A	V	F	K	S	L	W	D	Q	G	I
Query Conservation																																																																.	.	.	.
Alig confidence																																																																.	.	.	.
Template Conservation
Template Sequence		G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	Q	P	E	F	K	E	Y	S	R	L	V	V	E	N	A	K	R	L	A	E	E	L	A	R	R	G	Y	R	I	V	T	G	G	T	D	N	H	L	F	L	V	D	L	R	P	K	G	L	T	G	K	E	A	E	E	R	L	D	A	V	G	I
Template Known Secondary structure		S																	T	S																							T	T	T				G	G	G	S		S	S	S							G	G	G	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.						.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure										.	.	.	.	.													.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.													.	.	.	.	.	.	.
Query Sequence		I	L	R	D	Q	N	K	Q	.	.	.	.	.	P	S	L	S	G	C	L	R	I	T	V	G	.	.	.	.	.	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A
Query Conservation										.	.	.	.	.													.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	S	G	I	R	I	G	T	P	A	I	T	T	R	G	F	T	P	E	E	M	P	L	V	A	E	L	I	D	R
Template Known Secondary structure									T	T			S		T	T	T		S												T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions