Job Description P06986 Confidence 99.63% Date Thu Jan 5 10:59:42 GMT 2012 Rank 229 Aligned Residues 321 % Identity 12% Template c2cjdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:l-lysine-epsilon aminotransferase; PDBTitle: lysine aminotransferase from m. tuberculosis in external2 aldimine form Resolution 2.00 Å

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		27	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.																.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure													.	.								.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence													.	.								.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		G	G	N	G	D	V	W	L	N	A	N	.	.	E	Y	P	T	A	V	E	.	F	Q	L	T	Q	Q	T	L	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	E	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	.	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G
Query Conservation													.	.								.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence													.	.								.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence		T	G	R	R	Y	L	D	M	F	T	F	V	A	S	S	A	L	G	M	N	P	P	A	L	V	D	D	R	E	F	H	A	E	L	M	Q	A	A	L	N	K	P	S	N	S	D	V	Y	S	V	A	M	A	R	F	V	E	T	F	A	R	V	L	G	D	P	A	L	P	H	L	F	F	V	E	G	G	A	L	A
Template Known Secondary structure		T							S	S					T		S	S		B	S						T													T					T	T	T																				T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		88	.	90	.	.	.	.	.	.	.														.	.	100	.	.	.	.	.	.	.	.	.	110	.	.															.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	L	L	I	R	A	F	C	E	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	I
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	N	A	L	K	A	A	F	D	W	K	S	R	H	N	Q	A	H	G	I	D	P	A	L	G	T	Q	V	L	H	L	R	G	A	F	H	G	R	S	G	Y	T	L	S	L	T	N	T	K	P	T	I	T	A	R	F	P	K	F	D	W	P	R	I	D	A	P	Y	M	R	P	G	L	D	E	P	A	M	A
Template Known Secondary structure																				T	T	S		T	T									T	T					S	S	T	T	G	G	G	T			S						T	T	S															T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		141	.																.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Query Sequence		S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	.	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation
Template Sequence		A	L	E	A	E	A	L	R	Q	A	R	A	A	F	E	T	R	P	H	D	I	A	C	F	V	A	E	P	I	Q	G	E	G	G	D	R	H	F	R	P	E	F	F	A	A	M	R	E	L	C	D	E	F	D	A	L	L	I	F	D	E	V	Q	T	G	C	G	L	T	G	T	A	W	A	Y	Q	Q	L	D	V
Template Known Secondary structure																		S	T	T	T								S			S	T	T	T																			T	T								T	T	T	T	T	T	T	T	S	S	S	S	T					T
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	.	.	.	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A
Query Conservation																																																								.	.	.
Alig confidence							.																																																	.	.	.
Template Conservation							.
Template Sequence		A	P	D	I	V	.	A	F	G	K	K	T	Q	V	C	G	V	M	A	G	R	R	V	D	E	V	A	D	N	V	F	A	V	P	S	R	L	N	S	T	W	G	G	N	L	T	D	M	V	R	A	R	R	I	L	E	V	I	E	A	E	G	L	F	E	R	A	V	Q	H	G	K	Y	L	R	A	R	L	D	E
Template Known Secondary structure				S			.				G	G	G	S	S							G	G	G	G	G	S	T	T		T	T	T	S	T	T	S	S			S	S	S	S																			T
Template Predicted Secondary structure							.
Template SS confidence
		292	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																											.	.	.																																		.	.	.
Query SS confidence																											.	.	.																																		.	.	.
Query Sequence		A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	A	.	.	.	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A
Query Conservation																											.	.	.																																		.	.	.
Alig confidence																											.	.	.																			.	.	.	.	.											.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		L	A	A	D	F	P	A	V	V	L	D	P	R	G	R	G	L	M	C	A	F	S	L	P	T	T	A	D	R	D	E	L	I	R	Q	L	W	Q	R	A	V	I	V	L	P	A	.	.	.	.	.	G	A	D	T	V	R	F	R	P	P	L	T	V	S	T	A	E	I	D	A	A	I	A	A	V	R	S
Template Known Secondary structure						S	T	T	T	S							T	T							S	S														T	T							.	.	.	.	.	T	T	T								T	T
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.						.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions