Job Description P06986 Confidence 99.69% Date Thu Jan 5 10:59:42 GMT 2012 Rank 219 Aligned Residues 295 % Identity 16% Template c2a7vA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: human mitochondrial serine hydroxymethyltransferase 2 Resolution 2.04 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.			.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																						.	.	.	.								.	.						.																			.	.	.
Query SS confidence																						.	.	.	.								.	.						.																			.	.	.
Query Sequence		V	W	L	N	A	N	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	.	.	.	.	L	N	R	Y	P	E	C	.	.	Q	P	K	A	V	.	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	V	L	V	S	.	.	.	R	G	A	D	E	G	I	E	L	L	I	R	A	F	C	E	P	G	K	D
Query Conservation																						.	.	.	.								.	.						.																			.	.	.
Alig confidence												.	.									.	.	.	.								.	.						.																			.	.	.																			.
Template Conservation												.	.																																																																			.
Template Sequence		L	E	L	I	A	S	E	N	F	C	.	.	S	R	A	A	L	E	A	L	G	S	C	L	N	N	K	Y	S	E	G	V	D	E	I	E	L	L	C	Q	R	R	A	L	E	A	F	D	L	D	P	A	Q	W	G	V	N	V	Q	P	Y	S	G	S	P	A	N	L	A	V	Y	T	A	L	L	Q	P	H	.	D
Template Known Secondary structure						T	T					.	.									T	S	G	G	G	T							T														T	T			T	T	T								S	S															S		.
Template Predicted Secondary structure												.	.																																																																			.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	I	V
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template Sequence		R	I	M	G	Y	K	L	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	G	L	I	D	Y	N	Q	L	A	L	T	A	R	L	F	R	P	R	L	I	I	A	G	T	S	A	Y	A	R	L	I	D	Y	A	R	M	R	E	V	C	D	.	.	E	V	K	A	H	L
Template Known Secondary structure								B		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S	B															S							S	S			S													.	.		T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.																					.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230															.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	I	N	L	L	M	K	V	I	A	P	Y	P	L	S	T
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.																		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.																		.
Template Sequence		L	A	D	M	A	H	I	S	G	L	V	A	A	K	V	I	P	S	P	F	K	H	.	A	D	I	V	T	T	T	T	H	K	T	L	R	G	A	R	S	.	G	L	I	F	Y	R	K	G	V	K	A	V	D	P	K	T	G	R	E	I	P	Y	T	F	E	D	R	I	N	F	A	V	F	P	S	L	Q	G	G
Template Known Secondary structure						G	G	G						T	T	S	S			G	G	G	T	.		S						S	S	G	G	G		S		S		.								S						T	T	T																	T	T	T	T			S
Template Predicted Secondary structure																								.																		.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.					.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																	.	.	.																																												.	.	.	.
Query SS confidence																	.	.	.																																												.	.	.	.
Query Sequence		P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	I	.	.	.	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	.	.	.	.	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I
Query Conservation																	.	.	.																																												.	.	.	.
Alig confidence																	.	.	.																																												.	.	.	.
Template Conservation
Template Sequence		P	H	N	H	A	I	A	A	V	A	V	A	L	K	Q	A	C	T	P	M	F	R	E	Y	S	L	Q	V	L	K	N	A	R	A	M	A	D	A	L	L	E	R	G	Y	S	L	V	S	G	G	T	D	N	H	L	V	L	V	D	L	R	P	K	G	L	D	G	A	R	A	E	R	V	L	E	L	V	S	I	T
Template Known Secondary structure																			S																								T	T				G	G	G	S		S	S	S							T	T	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		321	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure				.	.	.	.																		.	.	.	.	.	.	.
Query SS confidence				.	.	.	.																		.	.	.	.	.	.	.
Query Sequence		L	R	.	.	.	.	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	.	.	.	.	.	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A
Query Conservation				.	.	.	.																		.	.	.	.	.	.	.
Alig confidence				.	.	.	.																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	K	N	T	C	P	G	D	R	S	A	I	T	P	G	G	L	R	L	G	A	P	A	L	T	S	R	Q	F	R	E	D	D	F	R	R	V	V	D	F	I	D	E
Template Known Secondary structure								T	T				S	S	S		S						S						T	T
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions