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Job DescriptionP0A9T4
Confidence38.24%DateThu Jan 5 11:11:18 GMT 2012
Rank53Aligned Residues250
% Identity17%Templatec3n2oA_
PDB info PDB header:lyaseChain: A: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40...... ...50.........60.........70.........80.........90.........100.......
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Query Sequence  AQLDYAVAQGINL. . . . . . IDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDR
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Template Sequence  EVVDEILASQAQLETKQLGLEAG. . . . . . . . . . . . . . SKPELLAVLAMAQHASSVIVC. . . . . . . . . . . . . . . . NGYKDR
Template Known Secondary structure  STT



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   111........120.........130... ......140.........150.... .....160
 
   108.110... ......120.........130.........140.........150.........160.....
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Query Sequence  KNIREA. . . . . . . . . . . . . . . . . . . . . . LHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALA
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Template Sequence  EYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGVT. PRLGIRIRLASQGAGK. WQASGGEKSKFGLSASQVLNVIS
Template Known Secondary structure  TT

STT

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STTSTTT.T
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   161........170.........180.........190......... 200.........210..... ....220.........230........
 
   166...170... ......180.........190.........200.........210.........220.........230.........240....
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Query Sequence  EYQRAGKI. RYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGK
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Template Sequence  RLKKENQLDTLQLVHFHLGSQMANIRDVRNGVN. . . . . . . . . . . . . . . . . ESARFYCELRTLGAN. ITYFDVGGGLAIDY
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   239240.........250.........260.........270. ........280...... ...290.........300
 
   245....250.........260.........270.........280.........290... ......300.. .......310
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Query Sequence  YLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMAL. . . AFVRRQPFV. ASTLLGAT. . . . . . . . . .
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Template Sequence  DGTRSQSSNSMNYGLV. . . . . . . EYARNIVNTVGDVCKDYKQPMPVIISESGRSLTAHHAVLISNVIGTETYKPETVTEP
Template Known Secondary structure  TS


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   301........310...... ...320.........330.........340.........350.........360.........370...
 
   311........320.... .....330.........340
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TMDQLKTNIESLHL. ELSEDVLAEIEAVHQV
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Template Sequence  EEDFPLLLNNMWRSWLNLHNGTDARALIEIYNDTQSDLAEVHSQFATGVLTLEHRAWAEQTSLR
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TT

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   374.....380.........390.........400.........410.........420.........430.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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