Job Description P0A9T4 Confidence 100.00% Date Thu Jan 5 11:11:18 GMT 2012 Rank 4 Aligned Residues 312 % Identity 32% Template c3lutA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2 Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80
Predicted Secondary structure																									.																																																			.
Query SS confidence																									.																																																			.
Query Sequence		Y	H	R	I	P	H	S	S	L	E	V	S	T	L	G	L	G	T	M	T	F	G	E	.	Q	N	S	E	A	D	A	H	A	Q	L	D	Y	A	V	A	Q	G	I	N	L	I	D	V	A	E	M	Y	P	V	P	P	R	P	E	T	Q	G	L	T	E	T	Y	V	G	N	W	L	A	K	.	H	G	S	R	E
Query Conservation																									.																																																			.
Alig confidence																									.																														.	.	.	.	.	.	.															.
Template Conservation																																																							.	.	.	.	.	.	.
Template Sequence		Y	R	N	L	G	K	S	G	L	R	V	S	C	L	G	L	G	T	W	V	T	F	G	G	Q	I	T	D	E	M	A	E	H	L	M	T	L	A	Y	D	N	G	I	N	L	F	D	T	A	E	V	Y	A	.	.	.	.	.	.	.	A	G	K	A	E	V	V	L	G	N	I	I	K	K	K	G	W	R	R	S
Template Known Secondary structure					S	T	T	S	S					S						T	T						S															T	T								T	T	G	G	.	.	.	.	.	.	.	G	G														T			G	G
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.								.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	I	I	A	S	K	V	S	G	P	S	R	N	N	D	K	G	I	R	P	D	Q	A	L	D	R	K	N	I	R	E	A	L	H	D	S	L	K	R	L	Q	T	D	Y	L	D	L	Y	Q	V	H	W	P	Q	R	P	T	N	C	F	G	K	L	G	Y	S	W	T	D	S	A	P	A	V	S	L	L	D	T
Query Conservation
Alig confidence																		.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	V	I	T	T	K	I	F	W	G	G	K	A	E	T	.	.	.	.	.	E	R	G	L	S	R	K	H	I	I	E	G	L	K	A	S	L	E	R	L	Q	L	E	Y	V	D	V	V	F	A	N	R	P	D	P	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	M	E	E	T
Template Known Secondary structure		G								S	B			S	S	G	G	.	.	.	.	.	G	B	S	S																	T		S								S	S			T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																		.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		L	D	A	L	A	E	Y	Q	R	A	G	K	I	R	Y	I	G	V	S	N	E	T	A	F	G	V	M	R	Y	L	H	L	A	D	K	H	D	L	P	R	I	V	T	I	Q	N	P	Y	S	L	L	N	R	S	F	.	E	V	G	L	A	E	V	S	Q	Y	E	G	V	E	L	L	A	Y	S	C	L	G	F	G
Query Conservation																																																									.
Alig confidence																																																									.
Template Conservation
Template Sequence		V	R	A	M	T	H	V	I	N	Q	G	M	A	M	Y	W	G	T	S	R	W	S	S	M	E	I	M	E	A	Y	S	V	A	R	Q	F	N	L	I	P	P	I	C	E	Q	A	E	Y	H	M	F	Q	R	E	K	V	E	V	Q	L	P	E	L	F	H	K	I	G	V	G	A	M	T	W	S	P	L	A	C	G
Template Known Secondary structure											T	T	S								S																	T												B	T	T	B						T																		T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		T	L	T	G	K	Y	L	N	G	A	K	P	A	G	A	R	N	T	L	F	S	.	.	.	.	.	R	F	T	R	Y	S	G	E	Q	T	Q	K	A	V	A	A	Y	V	D	I	A	R	R	H	G	L	D	P	A	Q	M	A	L	A	F	V	R	R	Q	P	F	V	A	S	T	L	L	G	A	T	T	M	D	Q
Query Conservation																							.	.	.	.	.
Alig confidence																							.	.	.	.	.
Template Conservation
Template Sequence		I	V	S	G	K	Y	D	S	G	I	P	P	Y	S	R	A	S	L	K	G	Y	Q	W	L	K	D	K	I	L	S	E	E	G	R	R	Q	Q	A	K	L	K	E	L	Q	A	I	A	E	R	L	G	C	T	L	P	Q	L	A	I	A	W	C	L	R	N	E	G	V	S	S	V	L	L	G	A	S	N	A	E	Q
Template Known Secondary structure		G	G	G	T	T	T	T	T	S			T	T	S	G	G	G	S	T	T									T	S																				T	T	S												T	S	T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		L	K	T	N	I	E	S	L	H	L	.	.	E	L	S	E	D	V	L	A	E	I	E	A	V	H	Q	V	Y	T	Y
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		L	M	E	N	I	G	A	I	Q	V	L	P	K	L	S	S	S	I	V	H	E	I	D	S	I	L	G	N	K	P	Y
Template Known Secondary structure							T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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