Job Description P0A9T4 Confidence 33.31% Date Thu Jan 5 11:11:18 GMT 2012 Rank 58 Aligned Residues 243 % Identity 13% Template c1ydoC_ PDB info PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181. Resolution 2.71 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		G	T	M	T	F	G	E	Q	N	S	E	A	D	A	H	A	Q	L	D	Y	A	V	A	Q	G	I	N	L	I	D	V	A	.	.	.	.	E	M	Y	P	V	P	P	R	P	E	T	Q	G	L	T	E	T	Y	V	G	N	W	L	A	K	H	G	S	R	E	K	L	I	I	A	S	K	V	S	G	P	S	R	N
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.				.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Sequence		G	L	Q	N	E	P	V	W	I	A	T	E	D	K	I	T	W	I	N	Q	L	S	R	T	G	L	S	Y	I	E	I	T	S	F	V	H	P	K	W	.	.	.	.	.	.	.	.	.	I	P	A	L	R	D	A	I	D	V	A	K	G	I	D	R	E	K	G	V	T	Y	A	A	L	V	.	.	.	.	.	.
Template Known Secondary structure		T	G	G	G	S	S	S																T	T	T		S								S		T	T	T	.	.	.	.	.	.	.	.	.		G	G	G	T	T								S				T	T								.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.										.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	K	G	I	R	P	D	Q	A	L	D	R	K	N	I	R	E	A	L	H	D	S	L	K	R	L	Q	T	D	Y	L	D	L	Y	Q	V	H	W	P	Q	R	P	T	N	C	F	G	K	L	G	Y	S	W	T	D	S	A	P	A	V	S	L	L	D	T	L	D	A	L	A	E	Y	Q	R	A	G	K	I	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																												.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																												.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	Q	R	G	L	E	N	A	L	E	G	.	G	I	N	E	A	C	V	F	X	S	A	S	E	T	H	N	R	K	N	I	N	K	S	T	S	E	S	.	.	.	.	.	.	.	.	L	H	I	L	K	Q	V	N	N	D	A	Q	K	A	N	L	T	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.		S											.	T		S								S	S						T	T	T		S						.	.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																												.	.	.	.	.	.	.	.
Template SS confidence
																82	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120									.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		175	.	.	.	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.																																															.	.
Query SS confidence								.	.	.	.	.	.	.	.	.																																															.	.
Query Sequence		Y	I	G	V	S	N	.	.	.	.	.	.	.	.	.	E	T	A	F	G	V	M	R	Y	L	H	L	A	D	K	H	D	L	P	R	I	V	T	I	Q	N	P	Y	S	L	L	N	R	S	F	E	V	G	L	A	E	V	S	Q	Y	E	.	.	G	V	E	L	L	A	Y	S	C	L	G	F	G	T	L	T	G
Query Conservation								.	.	.	.	.	.	.	.	.																																															.	.
Alig confidence								.	.	.	.	.	.	.	.	.																		.																													.	.													.	.	.	.	.
Template Conservation																																		.																																											.	.	.	.	.
Template Sequence		R	A	Y	L	S	T	V	F	G	C	P	Y	E	K	D	V	P	I	E	Q	V	I	R	L	S	E	A	L	F	E	F	G	.	I	S	E	L	S	L	G	D	T	I	G	A	A	N	P	A	Q	V	E	T	V	L	E	A	L	L	A	R	F	P	A	N	Q	I	A	L	H	F	H	D	T	R	.	.	.	.	.
Template Known Secondary structure								T	T		B	T	T	T	B																		T	.		S							S	S																	T	T	S		G	G	G						B	G	G	G	.	.	.	.	.
Template Predicted Secondary structure																																		.																																											.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310													.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	L	N	G	A	K	P	A	G	A	R	N	T	L	F	S	R	F	T	R	Y	S	G	E	Q	T	Q	K	A	V	A	A	Y	V	D	I	A	R	R	H	G	L	D	P	A	Q	M	A	L	A	F	V	R	R	Q	P	F	V	A	S	T	L	L	G	A	T	.	.	.	.	.	.	.	.	.	.	.	.	T
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	A	L	A	N	X	V	T	A	L	Q	X	G	I	T	V	F	D	G	S	A	G	G	L	G	G	C	P	Y	A	P	G	S	S	G	N	A	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S													T							B	G	G	G					T	T							B		B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																											213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		312	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.
Predicted Secondary structure															.	.																				.
Query SS confidence															.	.																				.
Query Sequence		M	D	Q	L	K	T	N	I	E	S	L	H	L	.	.	E	L	S	E	D	V	L	A	E	I	E	A	V	H	Q	V	Y	T	Y	.	P	A	P
Query Conservation															.	.																				.
Alig confidence															.	.																				.
Template Conservation
Template Sequence		T	E	D	I	V	Y	X	L	E	Q	X	D	I	K	T	N	V	K	L	E	K	L	L	S	A	A	K	W	I	E	E	K	X	G	K	P	L	P
Template Known Secondary structure												T	T		B																				T	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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