 |
| Job Description | P76164 | | Confidence | 1.96% | Date | Thu Jan 5 12:19:59 GMT 2012 |
| Rank | 17 | Aligned Residues | 20 |
| % Identity | 30% | Template | c2xgvA_ |
| PDB info |
PDB header:viral protein | Chain: A: PDB Molecule:psiv capsid n-terminal domain; |
PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik)
|
| Resolution | 2.00 Å |
|
| | |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . |
| Predicted Secondary structure | |
 |  |
|
|
| | | | | | | | |
|
|
|  | | | | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
Y | A | Q | N | T | M | L | N | L | K | L | T | I | P | G | L | R | A | E | R | K | V | I |
| Query Conservation | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Alig confidence | |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
|
|
| |
|
|
| . | . | . | |
|
|
| |
|
| | |
|
|
|
| Template Sequence | |
R | E | Q | V | Q | L | L | E | . |
. |
. |
V | V | P | G | L | Q | A | D | K | D | M | L |
| Template Known Secondary structure | |
| | | | | | | | . | . | . | |
|
| S |
| | | | | | | |
| Template Predicted Secondary structure | |
| | | | | | | | . | . | . | |
|
|
| | | | | | | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
50 | . | . | . | . | . | . | . | |
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
