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Job DescriptionP09546
Confidence100.00%DateWed Jan 25 15:20:14 GMT 2012
Rank1Aligned Residues965
% Identity50%Templatec3hazA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:proline dehydrogenase; PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  SRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAE
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Template Conservation              
      
                         
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Template Sequence  IPPPFTAPYAPDDAEIAARLLPASHLSPPQEARIHRTATRLIEAIRKRRL. . . . . GGVEDMLREFALSTKEGLALMVLAE
Template Known Secondary structure 







SS

T


TT


.....

TT

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   4.....10.........20.........30.........40.........50... ......60.........70........
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  ALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDM
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Template Sequence  ALLRVPDARTADQFIEDKLGEGDFIHHETKSTAFLVNASAWAARVIQP. . . . . . GETPDGTIGRLVKRLGAPAVRTATRQ
Template Known Secondary structure  TSS
TTTTS
TTT
GGG






T......T




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   81........90.........100.........110.........120........ .130.........140.........150....
 
   251........260.........270.........280.........290.........300.........310.........320.........330
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Query Sequence  AMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKL
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Template Sequence  AMRLMGNHFVLGETIEQALERGKPRSGQKTRYSFDMLGEGARTAADARRYFDAYASAIETIGKAAGNHALPDRPGISVKL
Template Known Secondary structure 
SS

SSS


SS





ST

S

TTSS

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   159160.........170.........180.........190.........200.........210.........220.........230........
 
   331........340.........350.........360.........370.........380.........390.........400.........410
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Query Sequence  SALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRC
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Template Sequence  SALHPRFEAISRARVMVELVPQLLDLAQRAKAHDLNFTVDAEEADRLELSLDVIAATLADPSLKGWDGFGLAIQAYQKRA
Template Known Secondary structure 
TT
SGGGTT




GGGTSGGGTT


TTBTT
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   411........420.........430.........440.........450.........460.........470.........480.........490
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Query Sequence  PLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAH
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Template Sequence  SAVIDYVDALARAHDRKLMVRLVKGAYWDTEIKRAQERGLDGYPVFTRKAMTDLNYVACASKLLALRPRIFPQFATHNAL
Template Known Secondary structure  TT



S
TT
SS
SB
SSTTTTT


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   319320.........330.........340.........350.........360.........370.........380.........390........
 
   491........500.........510.........520.........530....... ..540.........550.........560........
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Query Sequence  TLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPC. . RIYAPVGTHETLLAYLVRRLLENGANTSFVN
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Template Sequence  TVATVLEMAEGS. . . SGFEFQRLHGMGEALYEQLAKD. . . . . . HADIAYRTYAPVGSHRDLLAYLVRRLLENGANSSFVA
Template Known Secondary structure  SSS...SS
TTSS......
TT

GGGT
TT
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   399400.........410 .........420.........430.. .......440.........450.........460.........
 
   569570.........580.........590.........600.........610.........620.........630.........640........
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Query Sequence  RIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQAL
Query Conservation     
       
   
                       
       
 
                              
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Template Conservation             
   
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Template Sequence  QAADYRVPVPALLQRPADAIVRPQ. . . . . . AAAHPRIPLPCDLFAPERRNSRGVEFGARTALDQLLTDVKA. . . . . . . . .
Template Known Secondary structure  T
TTS
T


SGG......G
S
TTS

GGGTTTTT







TTS.........
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   470.........480.........490... ......500.........510.........520.........530....
 
   649650.........660.........670.........680.........690.........700.........710.........720........
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Query Sequence  PMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGIL
Query Conservation 
 
      
    
 



   


 
  

 


  

 

  
   
   
  


 

 
 



     


 
 
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Template Conservation  ....................       
  

   
  

 

  
   
   
  


 

   

 
     

    
Template Sequence  . . . . . . . . . . . . . . . . . . . . ETGDLKPIADATPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALL
Template Known Secondary structure  ....................











TS
T
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   535....540.........550.........560.........570.........580.........590....
 
   729730.........740.........750.........760.... .....770.........780.........790.....
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Query Sequence  VREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANE. . . . . . . . . . . . . THRPLGPVVCISPWNFPLAIFTGQIAAALAA
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Template Sequence  QREGGKTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMA
Template Known Secondary structure  TT


SS




TT
S

SSSTTT
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   595....600.........610.........620.........630.........640.........650.........660.........670....
 
   796...800.........810.........820.........830.........840.........850.........860.........870.....
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Query Sequence  GNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQG
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Template Sequence  GNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDG. RIGAALTAHPDIAGVVFTGSTEVARSINRALAAK. . . DG
Template Known Secondary structure  T


TT
T

TTT



.
TT

S
S...SS
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   675....680.........690.........700.........710.... .....720.........730.........740........ .750
 
   876...880.........890.........900.........910.........920.........930.........940.........950.....
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Query Sequence  RPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTD
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Template Sequence  PIVPLIAETGGINAMIADATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATH
Template Known Secondary structure 








TTS
GGGG
STT
T

BS
TTSTT
S
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   751........760.........770.........780.........790.........800.........810.........820.........830
 
   956...960.........970.........980.........990.........1000.........1010.........1020.........1030.....
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Query Sequence  IGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLP
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Template Sequence  VGPVIDVEAKQRLDAHIARMKTEARLHFAGPAP. . . . . . . . . EGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLE
Template Known Secondary structure  B


S
S



.........SSS




SSGGG

S


SS
GGG
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   831........840.........850.........860... ......870.........880.........890.........900.
 
   1036...1040.........1050.........1060.........1070.........1080.........1090.........1100.........1110.....
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Query Sequence  ELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPE
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Template Sequence  RVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGPKAGGPHYLARFATEQTV
Template Known Secondary structure  T


S
S



SSS
S



TTTS
B


GGGB



BTSTTSGGGG
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   902.......910.........920.........930.........940.........950.........960.........970.........980.
 
   1116...1120...
Predicted Secondary structure 







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Query Sequence  SALAVTLA
Query Conservation          
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Template Conservation    
    
Template Sequence  TINTAAAG
Template Known Secondary structure 
GGG
Template Predicted Secondary structure 




Template SS confidence 







   982.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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