Job Description P09546 Confidence 33.02% Date Wed Jan 25 15:20:14 GMT 2012 Rank 78 Aligned Residues 113 % Identity 14% Template c3gkuB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:probable rna-binding protein; PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940 Resolution 2.95 Å

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		262	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.								.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure													.																				.	.	.	.	.	.	.
Query SS confidence													.																				.	.	.	.	.	.	.
Query Sequence		G	E	T	I	A	E	A	L	A	N	A	.	R	K	L	E	E	K	G	F	R	Y	S	Y	D	M	L	G	E	A	A	.	.	.	.	.	.	.	L	T	A	A	D	A	Q	A	Y	M	V	S	Y	Q	Q	A	I	H	A	I	G	K	A	S	N	G	R	G	I	Y	E	G	P	G	I	S	I	K	L	S	A	L
Query Conservation													.																				.	.	.	.	.	.	.
Alig confidence													.																				.	.	.	.	.	.	.																													.
Template Conservation																																																																				.
Template Sequence		A	K	T	V	E	E	A	V	T	K	A	L	I	E	L	Q	T	T	S	D	K	L	T	Y	E	I	V	K	P	A	I	I	R	A	K	R	K	E	T	L	Q	D	K	A	I	E	F	L	E	Q	V	F	D	A	X	N	X	A	V	D	I	S	V	E	Y	N	.	E	T	E	K	E	X	N	V	N	L	K	G	D
Template Known Secondary structure			S	S	S											T	T			G	G	G																																		T	T											.	T	T	T	T								S	G
Template Predicted Secondary structure																																																																				.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	R	Y	S	R	A	Q	Y	D	R	V	M	E	E	L	Y	P	R	L	K	S	L	T	L	L	A	R	Q	Y	D	I	G	I	N	I	D	A	E	E	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	X	G	I	L	I	G	K	R	G	Q	T	L	D	S	L	Q	Y	L	V	S	L	V	V	N	K	S	S	S	D	Y	I	R	V	K	L	D	T	E	N	Y	R
Template Known Secondary structure		G	G	G	G	G	T	T	T																			T		S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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