Job Description P09546 Confidence 100.00% Date Wed Jan 25 15:20:14 GMT 2012 Rank 17 Aligned Residues 455 % Identity 26% Template c1t90B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis Resolution 2.50 Å

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		646	.	.	.	650	.	.	.	.	.	.				.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		Q	A	L	P	M	L	E	Q	P	V	A	.	.	.	A	G	E	M	S	P	V	I	N	P	A	E	P	K	D	I	V	G	Y	V	R	E	A	T	P	R	E	V	E	Q	A	L	E	S	A	V	N	N	A	P	I	W	F	A	T	P	P	A	E	R	A	A	I	L	H	R	A	A	V	L	M	E	S	Q	M	Q
Query Conservation													.	.	.
Alig confidence													.	.	.														.
Template Conservation																													.
Template Sequence		K	L	K	N	Y	I	N	G	E	W	V	E	S	K	T	D	Q	Y	E	D	V	V	N	P	A	T	K	.	E	V	L	C	Q	V	P	I	S	T	K	E	D	I	D	Y	A	A	Q	T	A	A	E	A	F	K	T	W	S	K	V	A	V	P	R	R	A	R	I	L	F	N	F	Q	Q	L	L	S	Q	H	K	E
Template Known Secondary structure		B						T	T						S		S								T	T	T	T	.																													T	T	S																			T
Template Predicted Secondary structure																													.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.													.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	I	G	I	L	V	R	E	A	G	K	T	F	S	N	A	I	A	E	V	R	E	A	V	D	F	L	H	Y	Y	A	G	Q	V	R	D	D	F	A	N	E	.	.	.	.	.	.	.	.	.	.	.	.	T	H	R	P	L	G	P	V	V	C	I	S	P	W	N	F	P	L	A	I	F	T	G	Q	I	A
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	A	H	L	I	T	I	E	N	G	K	N	T	K	E	A	L	G	E	V	G	R	G	I	E	N	V	E	F	A	A	G	A	P	S	L	M	M	G	D	S	L	A	S	I	A	T	D	V	E	A	A	N	Y	R	Y	P	I	G	V	V	G	G	I	A	P	F	N	F	P	M	M	V	P	C	W	M	F	P
Template Known Secondary structure																																	T	T															T	T											S								S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		791	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	A	A	G	N	S	V	L	A	K	P	A	E	Q	T	P	L	I	A	A	Q	G	I	A	I	L	L	E	A	G	V	P	P	G	V	V	Q	L	L	P	G	R	G	E	T	V	G	A	Q	L	T	G	D	D	R	V	R	G	V	M	F	T	G	S	T	E	V	A	T	L	L	Q	R	N	I	A	S	R
Query Conservation
Alig confidence																																															.
Template Conservation																																															.
Template Sequence		M	A	I	A	L	G	N	T	F	I	L	K	P	S	E	R	T	P	L	L	T	E	K	L	V	E	L	F	E	K	A	G	L	P	K	G	V	F	N	V	V	Y	G	A	H	.	D	V	V	N	G	I	L	E	H	P	E	I	K	A	I	S	F	V	G	S	K	P	V	G	E	Y	V	Y	K	K	G	S	E	N
Template Known Secondary structure						T	T									T	T	S														T	T			T	T	S							S		.										T	T								S															T
Template Predicted Secondary structure																																															.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		871	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	A	Q	G	R	P	I	P	L	I	A	E	T	G	G	M	N	A	M	I	V	D	S	S	A	L	T	E	Q	V	V	V	D	V	L	A	S	A	F	D	S	A	G	Q	R	C	S	A	L	R	V	L	C	L	Q	D	E	I	A	D	H	T	L	K	M	L	R	G	A	M	A	E	C	R	M	G	N	P	G
Query Conservation
Alig confidence			.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	K	R	V	Q	S	L	T	G	A	K	N	H	T	I	V	L	N	D	A	N	L	E	D	T	V	T	N	I	V	G	A	A	F	G	S	A	G	E	R	C	M	A	C	A	V	V	T	V	E	E	G	I	A	D	E	F	M	A	K	L	Q	E	K	V	A	D	I	K	I	G	N	G	L
Template Known Secondary structure		T	.	.	.	.	.	.																	T	T																G	G	G	G			T	T									T	T	T														T			B	S		T	T
Template Predicted Secondary structure			.	.	.	.	.	.
Template SS confidence
		244							.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		951	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.			.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		R	L	T	T	D	I	G	P	V	I	D	S	E	A	K	A	N	I	E	R	H	I	Q	T	M	R	S	K	G	R	P	V	F	Q	A	V	R	E	N	S	E	D	A	R	E	W	Q	S	G	T	F	V	A	P	T	L	I	E	.	.	L	D	D	F	A	E	L	Q	K	E	V	F	G	P	V	L	H	V	V	R
Query Conservation																																																												.	.
Alig confidence																																												.	.	.	.	.												.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		D	D	G	V	F	L	G	P	V	I	R	E	D	N	K	K	R	T	L	S	Y	I	E	K	G	L	E	E	G	A	R	L	V	C	D	G	R	E	N	V	S	D	.	.	.	.	.	D	G	Y	F	V	G	P	T	I	F	D	N	V	T	T	E	M	T	I	W	K	D	E	I	F	A	P	V	L	S	V	I	R
Template Known Secondary structure		S	T	T			B				S	S																		T							T	T	S	S			S	.	.	.	.	.	S	S	S									S			T	T	S					S				S	S
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.						360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		1029	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.		.	1100	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		Y	N	R	N	Q	L	P	E	L	I	E	Q	I	N	A	S	G	Y	G	L	T	L	G	V	H	T	R	I	D	E	T	I	A	Q	V	T	G	S	A	H	V	G	N	L	Y	V	N	R	N	M	V	G	A	V	V	G	V	Q	P	F	G	G	E	G	L	S	G	T	G	P	.	K	A	G	G	P	L	Y	L	Y
Query Conservation																																																																								.
Alig confidence			.	.																																																			.																	.
Template Conservation			.	.																																																			.
Template Sequence		V	.	.	K	N	L	K	E	A	I	E	I	A	N	K	S	E	F	A	N	G	A	C	L	F	T	S	N	S	N	A	I	R	Y	F	R	E	N	I	D	A	G	M	L	G	I	N	L	G	V	P	A	P	.	M	A	F	F	P	F	S	G	W	K	S	S	F	F	G	T	L	H	A	N	G	K	D	S	V	D
Template Known Secondary structure			.	.	S	S											S	S			S																						S					S		S					.		T	T	S		B					T	T			S	S	S		B	S
Template Predicted Secondary structure			.	.																																																			.
Template SS confidence
		393			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		1108	.	1110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	L	A	N	R	P	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	Y	T	R	K	K	V	V	T
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.