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Job DescriptionP33607
Confidence100.00%DateThu Jan 5 11:52:25 GMT 2012
Rank1Aligned Residues612
% Identity100%Templatec3rkoL_
PDB info PDB header:oxidoreductaseChain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALVTAFIGVDFFANGEQTYSQPLWTWMSVGDFNIGFNLV
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Template Sequence  MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALVTAFIGVDFFANGEQTYSQPLWTWMSVGDFNIGFNLV
Template Known Secondary structure 


TT

S
S
TTS


SS
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  LDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD
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Template Conservation 

 

      
  
   
  

  
         
     
    
   
 
 

  
 
 


  
 

 

      
Template Sequence  LDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD
Template Known Secondary structure 
TSS
S
TBSBSTTSTTS
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLA
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Template Sequence  PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLA
Template Known Secondary structure  TS

B
TT
SSST
TTSTT
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  DAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMF
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Template Sequence  DAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMF
Template Known Secondary structure  TTS
TTTTSTT
SB
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   321........330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  LALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKD
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Template Sequence  LALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKD
Template Known Secondary structure  TT
TTS

BSTT



TTT
T
SSSB
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   321........330.........340.........350.........360.........370.........380.........390.........400
 
   401........410.........420.........430.........440.........450.........460.........470.........480
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Query Sequence  EILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILSTFVGALIVPPLQGVLP
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Template Conservation   
                     

  
  
     
 
                
  

    
  
            
Template Sequence  EILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILSTFVGALIVPPLQGVLP
Template Known Secondary structure  TTT
SS


S






BTTGGG



TTTT

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   401........410.........420.........430.........440.........450.........460.........470.........480
 
   481........490.........500.........510.........520.........530.........540.........550.........560
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Query Sequence  QTTELAHGSMLTLEITSGVVAVVGILLAAWLWLGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLL
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Template Conservation                         
                                                        
Template Sequence  QTTELAHGSMLTLEITSGVVAVVGILLAAWLWLGKRTLVTSIANSAPGRLLSTWWYNAWGFDWLYDKVFVKPFLGIAWLL
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SSS

STGGGTT
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   481........490.........500.........510.........520.........530.........540.........550.........560
 
   561........570.........580.........590.........600.........610..
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Query Sequence  KRDPLNSMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVL
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Template Conservation       
                    
 
 
  
         


     
Template Sequence  KRDPLNSMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVL
Template Known Secondary structure  SS
TT




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   561........570.........580.........590.........600.........610..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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