Job Description P0ABC7 Confidence 98.14% Date Thu Jan 5 11:15:10 GMT 2012 Rank 4 Aligned Residues 236 % Identity 20% Template c2zv4O_ PDB info PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution Resolution 3.50 Å

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		98	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	T	I	K	E	A	E	R	G	V	V	T	.	.	R	F	G	K	F	S	H	L	V	E	P	G	L	N	W	K	P	T	F	I	D	E	V	K	P	V	N	V	E	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	L	A	A	S	G	V	M	L	T	S	D	E	N	V	V	R
Query Conservation														.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																				.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		Y	R	V	P	H	N	A	A	V	Q	V	Y	D	Y	R	A	K	R	A	R	V	V	F	G	P	E	L	V	T	L	D	P	E	.	E	Q	F	T	V	L	S	L	S	A	G	R	P	K	R	P	H	A	R	R	A	L	C	L	L	L	G	P	D	F	F	T	D	V	I	T	I	E	T	A	D	H	A	R	L	Q
Template Known Secondary structure						T	T								T	T	T								T	T							T	T	.											S	S	S			T	T	S				S	S				S	S												T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.		.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.						.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.							.	.																																															.	.
Query SS confidence											.	.	.	.	.							.	.																																															.	.
Query Sequence		V	E	M	N	V	Q	Y	R	V	.	.	.	.	.	T	N	P	E	K	Y	.	.	L	Y	S	V	T	S	P	D	D	S	L	R	Q	A	T	D	S	A	L	R	G	V	I	G	K	Y	T	M	D	R	I	L	T	E	G	R	T	V	I	R	S	D	T	Q	R	E	.	.	L	E	E	T	I	R	P	Y	D	M
Query Conservation											.	.	.	.	.							.	.																																															.	.
Alig confidence											.	.	.	.	.							.	.																																															.	.
Template Conservation
Template Sequence		L	Q	L	A	Y	N	W	H	F	E	L	K	N	R	N	D	P	A	E	A	A	K	L	F	S	V	P	D	F	V	G	D	A	C	K	A	I	A	S	R	V	R	G	A	V	A	S	V	T	F	D	D	F	H	K	N	S	A	R	I	I	R	M	A	V	F	G	F	E	K	A	R	D	Q	A	V	F	P	Q	N
Template Known Secondary structure													S		S	S							G	G	G	S	S	T	T																		T	T	S																	S	S							S					T	T	T
Template Predicted Secondary structure
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		G	I	T	L	L	D	V	N	F	Q	A	A	R	P	P	.	.	.	.	.	E	E	V	K	A	A	F	D	D	A	I	A	A	R	E	N	E	Q	Q	Y	I	R	E	A	E	A	Y	T	N	E	V	Q	P	R	A	N	G	Q	A	Q	R	I	L	E	E	A	R	A	Y	K	A	Q	T	I	L	E	A	Q	G	E
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.
Template Conservation
Template Sequence		G	L	V	V	S	S	V	D	V	Q	S	V	E	P	V	D	Q	R	T	R	D	A	L	Q	R	S	V	Q	L	A	I	E	I	T	T	N	S	Q	E	A	A	A	K	H	E	A	Q	R	L	E	Q	E	A	R	G	R	L	E	R	Q	K	I	L	D	Q	S	E	A	E	K	A	R	K	E	L	L	E	L	E	A
Template Known Secondary structure		T														S	S
Template Predicted Secondary structure
Template SS confidence
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	R	F	A	K	L	L	P	E	Y	K	A	A	P	E	I	T	R	E	R	L	Y	I	E	T	M	E	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	M	A	V	E	S	T	G	N	A	K	A	E	A	E	S	R	A	E	A	A	R	I	E	G	E	G	S	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		712	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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