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Job DescriptionP78271
Confidence8.73%DateThu Jan 5 12:33:11 GMT 2012
Rank23Aligned Residues208
% Identity12%Templatec3godA_
PDB info PDB header:immune systemChain: A: PDB Molecule:cas1; PDBTitle: structural basis for dnase activity of a conserved protein2 implicated in crispr-mediated antiviral defense
Resolution2.17 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20......... 30.........40.........50.........60...
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Query Sequence  KKRFIYHDEKSNKFWWIDYEGDSLAVNY. . . . GKVGSIGKFQTKEFDNEEQCLKEASKLIAAKMKK. . . . . . . . . . . . . .
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Template Sequence  GVLVGFCGGGGTPLFSANEVDVEVSWLTPQSEYRPTEYLQRWVGFWFDEEKRLVAARHFQRARLERIRHSWLEDRVLRDA
Template Known Secondary structure  T

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T
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   78.80.........90.........100.........110.........120.........130.........140.........150.......
 
   64.....70.........80.........90.........100.........110.... .....120.........130......
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Query Sequence  . GYQEDPKFNFMDRYYFDDEEIGLHVKTSHPNFQCHFTDPLYMCCWDEESPF. . . . . . GSDEGADALNVLENSLRKEPDL
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Template Sequence  GFAVDATALAVAVEDSARALEQAPNHEH. . LLTEEARLSKRLFKLAAQATRYGEFVRAKRGSGGDPANRFLDHGNYL. . .
Template Known Secondary structure  T



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   158.160.........170.........180..... ....190.........200.........210.........220.........230..
 
   137..140.........150.........160.........170.........180.........190.........200.........210......
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Query Sequence  DCADFPQMLIETMWGMKYIAMDSILEEDVRAQLLVDEMSTIQSNMITYATAFGQIKVMGKISHKLKKMGLNALARHQLTA
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Template Sequence  . . . . AYGLAATATWVLGIPHGLAVLHGKTRRGGLVFDVADLIKDSLILPQAFLSAXR. GDEEQDFRQACLDNLSRAQALD
Template Known Secondary structure  ....TT

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   233......240.........250.........260.........270.........280..... ....290.........300.......
 
   217..
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Query Sequence  KIL
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Template Sequence  FXI
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   308.310
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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