Job Description P77579 Confidence 100.00% Date Thu Jan 5 12:30:44 GMT 2012 Rank 1 Aligned Residues 379 % Identity 14% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	K	N	P	Q	A	S	K	T	S	F	W	G	E	L	P	Q	H	V	M	S	G	I	S	R	M	V	P	T	L	I	M	G	G	V	I	L	A	F	S	Q	L	I	A	Y	S	W	L	K	I	P	A	E	I	G	I	M	D	A	L	N	S	G	K	F	S	G	F	D	L	S	L	L	K	F	A	W	L	S
Query Conservation
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	Y	V	M	P	V	A	G	K	V	A	E	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L
Template Known Secondary structure		T	T	T	S																					G	G	G	T	T													T				T	T	T	T	T						T		S			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.											.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.													.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.													.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	S	F	G	G	V	L	F	G	F	A	I	P	M	F	A	A	F	V	A	N	S	I	G	G	K	L	A	F	P	A	.	.	G	F	I	G	G	L	M	S	T	Q	P	T	.	.	.	.	.	.	.	.	.	.	Q	L	L	N	F	D	P	S	T	M	Q	W	A	T	S	S	P	V	P	S	T	F	I	G	A
Query Conservation																																	.	.													.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Y	P	V	S	A	T	F	N	I	M	A	L	I	A	V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A
Template Known Secondary structure		G								T	T																		T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.							.
Predicted Secondary structure																			.	.	.																																																						.	.	.	.	.	.
Query SS confidence																			.	.	.																																																						.	.	.	.	.	.
Query Sequence		L	I	I	S	I	V	A	G	Y	L	V	K	W	M	N	Q	K	.	.	.	I	Q	L	P	D	F	L	L	A	F	K	T	T	F	L	L	P	I	L	S	A	I	F	V	M	L	A	M	Y	Y	V	I	T	P	F	G	G	W	I	N	G	G	I	R	T	V	L	T	A	A	G	E	K	.	.	.	.	.	.	G
Query Conservation																			.	.	.																																																						.	.	.	.	.	.
Alig confidence																			.	.	.																																																						.	.	.	.	.	.
Template Conservation
Template Sequence		M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A
Template Known Secondary structure																		T	T		S					T	T	S																														T	S	S	S		S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.							.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.										280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	M	Y	A	M	G	I	A	A	A	T	A	I	D	L	G	G	P	I	N	K	A	A	G	.	.	.	.	.	.	F	V	A	F	S	F	T	T	D	H	V	L	P	V	T	A	.	.	.	.	.	.	.	.	.	R	S	I	A	I	V	I	P	P	I	G	L	G	L	A	T	I	I	D	R	R	L	T	G
Query Conservation																											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	W	G	A	V	I	A	V	I	L	V	H	V	L	W	A	C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L
Template Known Secondary structure		S																	T	T	S						T																					T	T						S										T	S		S	S	S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.					.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.									370	.
Predicted Secondary structure																																	.	.	.	.																																				.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.																																				.	.	.	.	.	.	.	.
Query Sequence		K	R	L	F	N	A	Q	L	Y	P	Q	G	K	T	A	M	F	L	A	F	M	G	I	S	E	G	A	I	P	F	A	.	.	.	.	L	E	S	P	I	T	A	I	P	S	Y	M	V	G	A	I	V	G	S	T	A	A	V	W	L	G	A	V	Q	W	F	P	E	S	A	.	.	.	.	.	.	.	.	I	W
Query Conservation																																	.	.	.	.																																				.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	A	R	S	Q	Q	L	K	S	L	G	R	L	S	I	A	P	G	I	F	N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I	L	F	S
Template Known Secondary structure						S										T	S					T	T									T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	P	L	V	T	N	L	G	V	Y	M	A	G	I	A	L	G	A	V	I	T	A	L	M	V	V	F	L	R	L	M	M	F	R	K	G	K	L	L	I	D	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q	L	V	N	F	A	L	A	F	V	I	Y	L	P	F	L	K	I	W	D	K	Q	K	I	A	E	E	K	G
Template Known Secondary structure					T	T	T	T		T	T	T																															T	T
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.