Job Description P02359 Confidence 2.21% Date Thu Jan 5 10:57:31 GMT 2012 Rank 76 Aligned Residues 74 % Identity 8% Template c1u5tB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p; PDBTitle: structure of the escrt-ii endosomal trafficking complex Resolution 3.60 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.													.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	E	V	A	L	E	N	V	R	P	T	V	E	.	V	K	S	R	R	V	G	G	S	T	Y	Q	V	P	V	E	V	R	P	V	R	R	N	A	L	A	M	R	W	I	V	.	.	.	.	.	.	.	.	.	.	.	.	E	A	A	R	K	R	G	D	K	S	M	A	L	R	L	A	N	E	L	S	D	A	A
Query Conservation															.																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	E	A	C	E	R	F	E	H	L	G	L	N	E	L	K	L	V	K	V	N	K	R	I	L	C	V	T	S	E	K	F	D	V	V	K	E	K	L	V	D	L	I	G	D	N	P	G	S	D	L	L	R	L	T	Q	I	L	S	S	N	N	S	K	S	N	W	T	L	G	I	L	M	E	V	L	Q	N	C
Template Known Secondary structure							T	T	T	G	G	G	T			S							T	T	T						S	S		S														S		S	B											T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
		129	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	K	G	T	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	E	G	D	L	L
Template Known Secondary structure					T	S
Template Predicted Secondary structure
Template SS confidence
		540	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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