Return to main results Retrieve Phyre Job Id

Job DescriptionP16919
Confidence11.53%DateWed Jan 25 15:20:40 GMT 2012
Rank69Aligned Residues36
% Identity22%Templated1ab4a_
SCOP infoType II DNA topoisomerase Type II DNA topoisomerase Type II DNA topoisomerase
Resolution2.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1352.......1360.........1370.........1380.........1390........
Predicted Secondary structure 


































Query SS confidence 














































Query Sequence  VAAYHTHGADSHGDYVDEFFSSSDKNLVRSKDNNLEAFYLATPDGRF
Query Conservation                                                 
Alig confidence 






















.....




......







Template Conservation     





 

  


 


 
.....


  ......

   
 
Template Sequence  IGKYHPHGDSAVYDTIVRMAQPF. . . . . SLRYM. . . . . . LVDGQGNF
Template Known Secondary structure  T

S
TT
TT.....T
SS
......SS

Template Predicted Secondary structure 







.....




......







Template SS confidence 














































   74.....80.........90...... ...100. ........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions