Job Description P16919 Confidence 12.93% Date Wed Jan 25 15:20:40 GMT 2012 Rank 54 Aligned Residues 299 % Identity 9% Template c3vh0C_ PDB info PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna Resolution 2.90 Å

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		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.						.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		R	V	V	K	K	E	L	A	D	G	S	V	T	R	S	G	Y	D	A	A	G	R	L	T	A	Q	T	D	A	A	G	R	.	.	.	.	.	R	T	E	Y	G	L	N	V	V	S	G	D	I	T	D	I	T	T	P	D	G	R	E	T	K	F	Y	Y	N	D	G	N	Q	L	T	A	V	V	S	P	D	G	L
Query Conservation																																		.	.	.	.	.
Alig confidence												.																						.	.	.	.	.
Template Conservation												.
Template Sequence		E	M	L	R	K	A	V	G	K	G	.	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S
Template Known Secondary structure										S	S	.								T	T	T	T										T	T	T		S	S								T	T	T										S	S									T	T	T	T							G	G	G	T
Template Predicted Secondary structure												.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	R	R	E	Y	D	E	P	G	R	L	V	S	E	T	S	R	S	G	E	T	V	R	Y	R	Y	D	D	A	H	S	E	L	P	A	T	T	T	D	A	T	G	S	T	R	Q	M	T	W	S	R	Y	G	Q	L	L	A	F	T	D	C	S	G	Y	Q	T	R	Y	E	Y	D	R	F	G	Q	M	T	A	V
Query Conservation
Alig confidence																																	.	.
Template Conservation																																	.	.
Template Sequence		A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	.	.	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G
Template Known Secondary structure								T	T	T									S							S	S						.	.								T	T	T	T								S	S	S								T	T	T	T											T	T
Template Predicted Secondary structure																																	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.																	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	R	E	E	G	I	S	L	Y	R	R	Y	D	N	R	G	R	L	T	S	V	K	D	A	Q	G	R	E	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	Y	N	A	A	G	D	L	T	A	V	I	T	P	D	G	N	R	S	E	T	Q	Y	D	A	W	G	K	A	V	S	T	T
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V
Template Known Secondary structure						T	T	T	T							T	T	S	B						T	T	T	T							B				S	S	S											G	G	G	T							T	T	S	S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	G	L	T	R	S	M	E	Y	D	A	A	G	R	V	I	S	L	T	N	E	N	G	S	H	S	V	F	S	Y	D	A	L	D	R	L	V	Q	Q	G	G	F	D	G	R	T	Q	R	Y	H	Y	D	L	T	G	K	L	T	Q	S	E	D	E	G	L	V	I	L	W	Y	Y	D	E	S	D	R	I	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D	V	I
Template Known Secondary structure				S									G	G	G	T							T	T	T	T							T	T	T	T										S									T	T	S	S												S	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		712	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions