Job Description P16919 Confidence 30.30% Date Wed Jan 25 15:20:40 GMT 2012 Rank 11 Aligned Residues 237 % Identity 11% Template c2ivzD_ PDB info PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain Resolution 2.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.		.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		R	I	T	V	T	D	S	L	N	R	R	E	V	L	H	T	E	G	G	A	G	L	K	R	V	V	K	K	E	L	A	D	G	S	V	T	R	S	G	Y	D	A	A	G	.	R	L	T	A	Q	T	D	A	A	G	R	R	T	E	Y	G	L	N	V	V	S	G	D	I	T	D	I	T	T	P	D	G	R	E	T
Query Conservation																																														.
Alig confidence																						.	.																							.
Template Conservation																						.	.
Template Sequence		R	I	A	Y	V	V	Q	T	F	P	Y	E	L	R	V	S	D	Y	D	G	.	.	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A	S	F	P	R	H	N	G
Template Known Secondary structure																			T	T	S	.	.		S								S	S									T	T	S	S								T	T	S	S								T	T	T										S	S
Template Predicted Secondary structure																						.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		469	470	.	.	.	.	.	.	.		.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		K	F	Y	Y	N	D	G	N	Q	.	L	T	A	V	V	S	P	D	G	L	E	S	R	R	E	Y	D	E	P	G	R	L	V	S	E	T	S	R	S	G	E	T	V	R	Y	R	Y	D	D	A	H	S	E	L	P	A	T	T	T	D	A	T	G	S	T	R	Q	M	T	W	S	R	Y	G	Q	L	L	A	F	T
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I
Template Known Secondary structure							T	T	S	S								T	T	S	S								T	T	T										S	S									T	T	S	S								T	T	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.		.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		D	C	S	G	Y	Q	T	R	Y	E	Y	D	R	F	G	Q	M	T	A	V	H	R	E	E	G	I	S	L	Y	R	R	Y	D	N	R	G	R	L	T	S	V	K	D	A	Q	G	R	E	T	R	Y	E	Y	N	A	A	G	D	L	T	A	.	V	I	T	P	D	G	N	R	S	E	T	Q	Y	D	A	W	G	K
Query Conservation																																																															.
Alig confidence																													.	.																																	.
Template Conservation																													.	.
Template Sequence		T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	Q	H	I	.	.	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R
Template Known Secondary structure				S	S	S									T	T	S	S											.	.					T	T	T									S	S	S								T	T	S	S							S	G	G	G	G	T	S						T	T	S
Template Predicted Secondary structure																													.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		627	.	.	630
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	A	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions