Job Description P16919 Confidence 37.46% Date Wed Jan 25 15:20:40 GMT 2012 Rank 6 Aligned Residues 73 % Identity 25% Template c1j5qB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:major capsid protein; PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus. Resolution 2.55 Å

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		1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	L	P	G	Q	Q	H	D	E	E	S	G	L	Y	Y	N	R	H	R	Y	Y	D	P	L	Q	G	R	Y	I	T	Q	D	P	M	G	L	K	G	G	W	N	L	Y	Q	Y	P	L	N	P	L	Q	Q	I	D	P	M	G	L	L	Q	T	W	D	D	A	R	S	G	A	C	T	G	G	V	C	G	V	L	S
Query Conservation
Alig confidence																		.	.																	.	.	.	.	.															.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																	.	.	.	.	.															.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Q	L	N	G	Q	D	R	F	A	T	R	K	G	S	Y	.	.	F	N	K	V	Q	P	Y	Q	S	I	G	G	V	T	P	A	.	.	.	.	.	G	V	Y	L	Y	S	F	A	L	K	P	A	G	R	.	Q	P	S	G	T	C	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S
Template Known Secondary structure					T	T			S	S								.	.										T		S				T	.	.	.	.	.	T						S	S	S		T	T	S	S	.	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																		.	.																	.	.	.	.	.															.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.						350	.	.	.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.	370																		.	.
		1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	I	G	P	S	K	F	D	S	T	A	D	A	A	L	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	D	N	A	T	L	S	L	T	Y	K	T	C	S	I	D	A
Template Known Secondary structure		G		S															T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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