Job Description P0AC23 Confidence 50.34% Date Thu Jan 5 11:16:57 GMT 2012 Rank 14 Aligned Residues 222 % Identity 12% Template c3d9sB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:aquaporin-5; PDBTitle: human aquaporin 5 (aqp5) - high resolution x-ray structure Resolution 2.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		V	Y	K	A	T	K	H	P	L	K	T	F	Y	L	A	I	T	A	G	V	F	I	S	I	A	F	V	F	Y	I	T	A	T	T	G	T	G	T	M	P	F	G	M	A	K	L	V	G	G	I	C	F	S	L	G	L	I	L	C	V	V	C	G	A	D	L	F	T	S	T	V	L	I	V	V	A	.	K	A	S
Query Conservation																																																																														.
Alig confidence																												.	.	.																																																.
Template Conservation																												.	.	.
Template Sequence		K	E	V	C	S	V	A	F	L	K	A	V	F	A	E	F	L	A	T	L	I	F	V	F	F	G	.	.	.	L	G	S	A	L	K	W	P	S	A	L	P	T	I	L	Q	I	A	L	A	F	G	L	A	I	G	T	L	A	Q	A	L	G	P	V	S	G	G	H	I	N	P	A	I	T	L	A	L	L	V	G
Template Known Secondary structure					S	S																						.	.	.			T	T	S			T	T	S																																									T
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		G	R	I	T	W	G	Q	L	A	K	N	W	L	N	V	Y	F	G	N	L	V	G	A	L	L	F	V	L	L	M	.	.	W	L	S	G	E	Y	M	T	A	N	G	Q	W	G	L	N	V	L	Q	T	A	D	H	K	V	H	H	T	F	I	E	A	V	C	L	G	I	L	A	N	L	M	V	C	L	A	V	W
Query Conservation																																.	.
Alig confidence																																.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	Q	I	S	L	L	R	A	F	F	Y	V	A	A	Q	L	V	G	A	I	A	G	A	G	I	L	Y	G	V	A	P	L	N	A	R	G	N	L	A	V	N	A	L	N	N	.	.	.	.	.	.	.	.	.	.	.	.	N	T	T	Q	G	Q	A	M	V	V	E	L	I	L	T	F	Q	L	A	L	C	I	F
Template Known Secondary structure		T		S																											S						T	T	T	T						T	.	.	.	.	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.													.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		181	.	.						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																																					.
Query SS confidence					.	.	.	.	.																																					.
Query Sequence		M	S	Y	.	.	.	.	.	S	G	R	S	L	M	D	K	A	F	I	M	V	L	P	V	A	M	F	V	A	S	G	F	E	H	S	I	A	N	M	F	M	I	P	M	.	G	I	V	I	R	D	F	A	S	P	E	F	W	T	A	V	G	S	A	P	E	N	F	S	H	L	T	V	M	N	F	I	T	D	N
Query Conservation					.	.	.	.	.																																					.
Alig confidence					.	.	.	.	.																																					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	T	D	S	R	R	T	S	P	V	G	S	P	A	L	S	I	G	L	S	V	T	L	G	H	L	V	G	I	Y	F	T	G	C	S	M	N	P	A	R	S	F	G	P	A	V	V	M	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	P	A
Template Known Secondary structure				T		S	S			S																									S			S	S											T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.																										.	200	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	P	V	T	I	G	N	I	I	G	G	G	L	L	V	G	L	T	Y	W	V	I	Y	L	R	E	N	D	H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	W	V	F	W	V	G	P	I	V	G	A	V	L	A	A	I	L	Y	F	Y	L	L	F	P	N	S	L	S	L	S
Template Known Secondary structure		T	T																			T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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