Job Description P31828 Confidence 100.00% Date Thu Jan 5 11:48:53 GMT 2012 Rank 20 Aligned Residues 317 % Identity 15% Template c3cxhM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:cytochrome b-c1 complex subunit 2, mitochondrial; PDBTitle: structure of yeast complex iii with isoform-2 cytochrome c2 bound and definition of a minimal core interface for3 electron transfer. Resolution 2.50 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	Y	M	I	Y	P	H	A	H	P	K	D	Q	V	N	L	W	L	Q	I	H	T	G	S	L	Q	E	E	D	N	E	L	G	V	A	H	F	V	E	H	M	M	F	N	G	T	K	T	W	P	G	N	K	V	I	E	T	F	E	S	M	G	L	R	F	G	R	D	V	N	A	Y	T	S	Y	D	E	T	V
Query Conservation
Alig confidence													.	.																		.	.																															.	.	.	.
Template Conservation													.	.																		.	.																															.	.	.	.
Template Sequence		L	T	V	S	A	R	D	A	P	T	K	.	.	I	S	T	L	A	V	K	V	H	G	G	S	R	Y	A	T	K	.	.	D	G	V	A	H	L	L	N	R	F	N	F	Q	N	T	N	T	R	S	A	L	K	L	V	R	E	S	E	L	L	.	.	.	.	G	G	T	F	K	S	T	L	D	R	E	Y	I	T
Template Known Secondary structure										S		S	.	.									S		S	G	G	G		S	S	.	.	T	T									T	T	S		B	S	S	S													.	.	.	.	T									S	S
Template Predicted Secondary structure													.	.																		.	.																															.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		Y	Q	V	S	L	P	T	T	Q	K	Q	N	L	Q	Q	V	M	A	I	F	S	E	W	S	N	A	A	T	F	E	K	L	E	V	D	A	E	.	R	G	V	I	T	E	E	W	R	A	H	Q	D	A	K	W	R	T	S	Q	A	R	R	P	F	L	L	A	N	T	R	N	L	D	R	E	P	I	G	L	M	D
Query Conservation																																							.
Alig confidence							.	.	.																														.																														.										.	.
Template Conservation							.	.	.																																																												.										.	.
Template Sequence		L	K	A	T	F	.	.	.	L	K	D	D	L	P	Y	Y	V	N	A	L	A	D	V	L	Y	K	T	A	F	K	P	H	E	L	T	E	S	V	L	P	A	A	R	Y	D	Y	A	V	A	E	Q	C	P	V	K	S	A	E	D	Q	L	Y	A	I	T	F	R	.	K	G	L	G	N	P	L	L	Y	.	.	D
Template Known Secondary structure							.	.	.		G	G	G															B										T																													S	S	.	S	S	T	T	S		S	S		.	.
Template Predicted Secondary structure							.	.	.																																																												.										.	.
Template SS confidence
		89	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.			.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	A	T	V	T	P	A	Q	L	R	Q	F	Y	Q	R	W	Y	Q	P	N	N	M	T	F	I	V	V	G	D	I	D	S	K	E	A	L	A	L	I	K	D	N	L	S	K	L	P	A	N	K	A	A	E	N	R	V	W	P	T	K	A	E	N	H	L	R	F	N	I	I	N	D	K	E	N	R	V	N	G
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.
Template Sequence		G	V	E	R	V	S	L	Q	D	I	K	D	F	A	D	K	V	Y	T	K	E	N	L	E	V	S	G	E	N	V	V	E	A	D	L	K	R	F	V	D	E	S	L	L	S	T	L	P	A	G	K	S	L	V	S	K	S	E	P	K	F	F	L	G	E	E	N	R	.	.	.	.	.	.	.	V	R	F	I	G
Template Known Secondary structure		S	S	S																	G	G	G							S	S												S	T	T	T	T	S									S	S							S					.	.	.	.	.	.	.				S	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230								.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	L	Y	Y	R	L	P	M	V	Q	V	N	D	E	Q	S	F	I	E	Q	A	E	W	S	M	L	V	Q	L	F	N	Q	R	L	Q	E	R	I	Q	S	G	E	L	K	T	I	S	G	G	T	A	R	S	V	K	I	A	P	D	Y	Q	S	L	F	F	R	V	N	A	R	D	D	N	M	Q	D	A	A	N
Query Conservation
Alig confidence										.	.																					.																	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation										.	.																					.																	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Sequence		D	S	V	A	A	I	G	I	.	.	P	V	N	K	A	S	L	A	Q	Y	E	V	L	A	N	Y	L	T	S	A	.	L	S	E	L	S	G	L	I	S	S	A	K	L	D	K	F	.	.	.	.	.	.	.	.	.	.	.	T	D	G	G	L	F	T	L	F	V	R	D	Q	D	S	.	.	.	.	.	.	A
Template Known Secondary structure										.	.				S	S	T													S	T	.	T		T	T	G	G	G		S								.	.	.	.	.	.	.	.	.	.	.	T	T											S	S		.	.	.	.	.	.
Template Predicted Secondary structure										.	.																					.																	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.												280	.	.	.	.	.	.	.	.	.	290	.	.	.	.							.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	M	A	E	L	A	T	I	D	Q	H	G	F	S	A	E	E	L	D	D	V	K	S	T	R	L	T	W	L	K	N	A	V	D	Q	Q	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	S	S	N	I	K	K	I	V	A	D	L	K	K	G	K	D	L	S	P	A	I	N	Y	T	K	L	K	N	A	V	Q	N	E	S	V	S	S
Template Known Secondary structure																S					S	T	T								T	T			S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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