Job Description P31828 Confidence 100.00% Date Thu Jan 5 11:48:53 GMT 2012 Rank 16 Aligned Residues 399 % Identity 16% Template c3cx5L_ PDB info PDB header:oxidoreductase Chain: L: PDB Molecule:cytochrome b-c1 complex subunit 1, mitochondrial; PDBTitle: structure of complex iii with bound cytochrome c in reduced2 state and definition of a minimal core interface for3 electron transfer. Resolution 1.90 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	L	D	N	G	L	R	Y	M	I	Y	P	H	A	H	P	K	D	Q	V	N	L	W	L	Q	I	H	T	G	S	L	Q	E	E	D	N	E	L	G	V	A	H	F	V	E	H	M	M	F	N	G	T	K	T	W	P	G	N	K	V	I	E	T	F	E	S	M	G	L	R	F	G	R	D	V	N	A	Y	T
Query Conservation
Alig confidence																				.																																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	L	S	N	G	I	V	V	A	T	E	H	N	P	S	A	H	.	T	A	S	V	G	V	V	F	G	S	G	A	A	N	E	N	P	Y	N	N	G	V	S	N	L	W	K	N	I	F	L	S	K	E	N	S	A	V	A	A	K	E	.	.	.	.	.	.	.	.	.	.	.	G	L	A	L	S	S	N	I
Template Known Secondary structure						S	S	S								T	T		S	.									S			G	G	G	S		T	T	T	T	T										T											T	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																				.																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.												90	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150				.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																			.	.	.																						.
Query SS confidence																																			.	.	.																						.
Query Sequence		S	Y	D	E	T	V	Y	Q	V	S	L	P	T	T	Q	K	Q	N	L	Q	Q	V	M	A	I	F	S	E	W	S	N	A	A	.	.	.	T	F	E	K	L	E	V	D	A	E	R	G	V	I	T	E	E	W	R	A	H	.	Q	D	A	K	W	R	T	S	Q	A	R	R	P	F	L	L	A	N	T	R	N	L
Query Conservation																																			.	.	.																						.
Alig confidence													.	.	.																				.	.	.																						.
Template Conservation													.	.	.
Template Sequence		S	R	D	F	Q	S	Y	I	V	S	S	.	.	.	L	P	G	S	T	D	K	S	L	D	F	L	N	Q	S	F	I	Q	Q	K	A	N	L	L	S	S	S	N	F	E	A	T	K	K	S	V	L	K	Q	V	Q	D	F	E	D	N	D	H	P	N	R	V	L	E	H	L	H	S	T	A	F	Q	N	T	P	L
Template Known Secondary structure			S	S									.	.	.		G	G	G													T	T		S	S	S	T	T																																					T	T	T	S	G	G
Template Predicted Secondary structure													.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	E	P	I	G	L	M	D	T	V	A	T	V	T	P	A	Q	L	R	Q	F	Y	Q	R	W	Y	Q	P	N	N	M	T	F	I	V	V	G	D	I	D	S	K	E	A	L	A	L	I	K	D	N	L	S	K	L	P	A	N	K	A	A	E	N	R	V	W	P	T	K	A	E	N	H	L	R	F	N	I	I
Query Conservation
Alig confidence																																																														.	.	.
Template Conservation																																																														.	.	.
Template Sequence		S	L	P	T	R	G	T	L	E	S	L	E	N	L	V	V	A	D	L	E	S	F	A	N	N	H	F	L	N	S	N	A	V	V	V	G	T	G	N	I	K	H	E	D	L	V	N	S	I	E	S	K	N	L	S	L	Q	T	G	T	.	.	.	K	P	V	L	K	K	K	A	A	F	L	G	S	E	V	R	L
Template Known Secondary structure		G	S		T	T							T	T														S		G	G	G								S													S				S	S				.	.	.
Template Predicted Secondary structure																																																														.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.										.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.
Query Sequence		N	D	K	E	N	R	V	N	G	I	A	L	Y	Y	R	L	P	M	V	Q	V	N	D	E	Q	S	F	I	E	Q	A	E	W	S	M	L	V	Q	L	F	.	.	.	.	.	.	.	.	.	N	Q	R	L	Q	E	R	I	Q	S	G	E	L	K	T	I	S	G	G	T	A	R	S	V	K	I	A	P	D	Y	Q
Query Conservation																																										.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																				.	.	.	.	.	.	.	.	.												.									.	.
Template Conservation																					.	.																																								.									.	.
Template Sequence		R	D	D	T	L	P	K	A	W	I	S	L	A	V	E	G	E	P	V	.	.	N	S	P	N	Y	F	V	A	K	L	A	A	Q	I	F	G	S	Y	N	A	F	E	P	A	S	R	L	Q	G	I	K	L	L	D	N	I	Q	E	Y	.	Q	L	C	D	N	F	N	H	.	.	F	S	L	S	Y	K	D	S	G
Template Known Secondary structure				T	T	S	S	S												T	.	.	T		T	T																T	T	S	T	T	G	G	G	S	S		T							T	T	.	T			S					.	.						S	S
Template Predicted Secondary structure																					.	.																																								.									.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	F	F	R	V	N	A	R	D	D	N	M	Q	D	A	A	N	A	L	M	A	E	L	A	T	I	D	Q	H	G	F	S	A	E	E	L	D	D	V	K	S	T	R	L	T	W	L	K	N	A	V	D	Q	Q	A	E	R	D	L	R	M	L	T	S	R	L	A	S	S	S	L	N	N	T	P	F	L	S	P
Query Conservation
Alig confidence																																																							.	.	.
Template Conservation																																																							.	.	.
Template Sequence		L	W	G	F	S	T	A	T	R	N	V	T	M	I	D	D	L	I	H	F	T	L	K	Q	W	N	R	L	T	I	S	V	T	D	T	E	V	E	R	A	K	S	L	L	K	L	Q	L	G	Q	L	Y	E	.	.	.	S	G	N	P	V	N	D	A	N	L	L	G	A	E	V	L	I	K	G	S	K	L	S	L
Template Known Secondary structure										S		T	T																			T																						S	.	.	.		S																	S	S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.				380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	T	Y	Q	L	S	K	R	L	W	Q	Q	I	T	V	Q	S	L	A	E	K	W	Q	Q	L	R	K	N	Q	D	A	F	W	E	Q	M	V	N	N	E	V
Query Conservation
Alig confidence				.	.	.	.
Template Conservation				.	.	.	.
Template Sequence		G	E	.	.	.	.	A	F	K	K	I	D	A	I	T	V	K	D	V	K	A	W	A	G	K	R	L	W	D	Q	D	I	A	I	A	G	T	G	Q	I	E	G
Template Known Secondary structure				.	.	.	.																					T	T	T										S		T	T
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		404	.					.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.