Job Description P31828 Confidence 100.00% Date Thu Jan 5 11:48:53 GMT 2012 Rank 3 Aligned Residues 863 % Identity 13% Template c1q2lA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:protease iii; PDBTitle: crystal structure of pitrilysin Resolution 2.20 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	K	L	I	T	G	Q	L	D	N	G	L	R	Y	M	I	Y	P	H	A	H	P	K	D	Q	V	N	L	W	L	Q	I	H	T	G	S	L	Q	E	E	D	N	E	L	G	V	A	H	F	V	E	H	M	M	F	N	G	T	K	T	W	P	G	N	K	V	I	E	T	F	E	S	M	G	L	R	F	G	R
Query Conservation
Alig confidence																										.																																										.	.	.
Template Conservation																										.																																										.	.	.
Template Sequence		N	R	Q	Y	Q	A	I	R	L	D	N	G	M	V	V	L	L	V	S	D	P	Q	A	V	.	K	S	L	S	A	L	V	V	P	V	G	S	L	E	D	P	E	A	Y	Q	G	L	A	H	Y	L	E	H	M	S	L	M	G	S	K	K	Y	P	Q	A	D	.	.	.	S	L	A	E	Y	L	K	M	H	G	G
Template Known Secondary structure											T	T	S									T	T		S	.	S								S			G	G	G			G	G	G	T	T									T	T	S		B	S	S	S		S	T	T	.	.	.								T	T	T
Template Predicted Secondary structure																										.																																										.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	N	A	Y	T	S	Y	D	E	T	V	Y	Q	V	S	L	P	T	T	Q	K	Q	N	L	Q	Q	V	M	A	I	F	S	E	W	S	N	A	A	T	F	E	K	L	E	V	D	A	E	R	G	V	I	T	E	E	W	R	A	H	Q	D	A	K	W	R	T	S	Q	A	R	R	P	F	L	L	A	N	T	R
Query Conservation
Alig confidence																			.	.	.
Template Conservation																			.	.	.
Template Sequence		S	H	N	A	S	T	A	P	Y	R	T	A	F	Y	L	E	V	.	.	.	E	N	D	A	L	P	G	A	V	D	R	L	A	D	A	I	A	E	P	L	L	D	K	K	Y	A	E	R	E	R	N	A	V	N	A	E	L	T	M	A	R	T	R	D	G	M	R	M	A	Q	V	S	A	E	T	I	N	P	A	H
Template Known Secondary structure									S	S									.	.	.		G	G	G															B				S	T	T																T	T	S												S	S		T	T	S
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.																																																											.
Query SS confidence																			.	.	.	.																																																											.
Query Sequence		N	L	D	R	E	P	I	G	L	M	D	T	V	A	T	V	T	.	.	.	.	P	A	Q	L	R	Q	F	Y	Q	R	W	Y	Q	P	N	N	M	T	F	I	V	V	G	D	I	D	S	K	E	A	L	A	L	I	K	D	N	L	S	K	L	P	A	N	K	A	A	E	N	R	V	W	P	T	K	A	E	N	.
Query Conservation																			.	.	.	.																																																											.
Alig confidence																			.	.	.	.																																																											.
Template Conservation
Template Sequence		P	G	S	K	F	S	G	G	N	L	E	T	L	S	D	K	P	G	N	P	V	Q	Q	A	L	K	D	F	H	E	K	Y	Y	S	A	N	L	M	K	A	V	I	Y	S	N	K	P	L	P	E	L	A	K	M	A	A	D	T	F	G	R	V	P	N	K	E	S	K	K	P	E	I	T	V	P	V	V	T	D	A
Template Known Secondary structure		G	G	G	S			S							S		B	T	T	B																T	T	T								S	S												T	G	G	G	S												S		S			G	G
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		H	L	R	F	N	I	I	N	D	K	E	N	R	V	N	G	I	A	L	Y	Y	R	L	P	M	V	Q	V	N	D	E	Q	S	F	I	E	Q	A	E	W	S	M	L	V	Q	L	F	N	Q	R	L	Q	E	R	I	Q	S	G	E	L	K	T	I	S	G	G	T	A	R	S	V	K	I	.	A	P	D	Y	Q	S
Query Conservation																																																																											.
Alig confidence																																																																											.
Template Conservation
Template Sequence		Q	K	G	I	I	I	H	Y	V	P	A	L	P	R	K	V	L	R	V	E	F	R	I	D	N	N	S	A	K	F	R	S	K	T	D	E	L	I	T	Y	L	I	G	N	R	S	P	G	T	L	S	D	W	L	Q	K	Q	G	L	V	E	G	I	S	A	N	S	D	P	I	V	N	G	N	S	G	V	L	A	I
Template Known Secondary structure		G	S	S								S	S															G	G	G	G	G	G															T	T	S								T	T											S	S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	F	R	V	N	A	R	D	D	N	M	Q	D	A	A	N	A	L	M	A	E	L	A	T	I	D	Q	H	G	F	S	A	E	E	L	D	D	V	K	S	T	R	L	T	W	L	K	N	A	V	D	Q	Q	A	E	R	D	L	R	M	L	T	S	R	L	A	S	S	S	L	N	N	T	P	F	L	S	P	E
Query Conservation
Alig confidence																																																										.	.	.	.																.	.	.	.	.
Template Conservation																																																										.	.	.	.																.	.	.	.	.
Template Sequence		S	A	S	L	T	D	K	G	L	A	N	R	D	Q	V	V	A	A	I	F	S	Y	L	N	L	L	R	E	K	G	I	D	K	Q	Y	F	D	E	L	A	N	V	L	D	I	D	F	R	Y	P	S	I	T	R	D	M	.	.	.	.	D	Y	V	E	W	L	A	D	T	M	I	R	V	P	V	.	.	.	.	.
Template Known Secondary structure												T																																						S						S		.	.	.	.											T	T	S		G	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.																.	.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.					410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.											.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	Y	Q	L	S	K	R	L	W	Q	Q	I	T	V	Q	S	L	A	E	K	W	Q	Q	L	R	K	N	Q	D	A	F	W	E	Q	M	.	.	.	.	.	.	.	.	.	.	V	N	N	E	V	A	A	K	K	A	L	S	P	A	A	I	L	A	L	E	K	E	Y	A	N	K	K	L	A	A	Y	V	F	P
Query Conservation																																						.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	H	T	L	D	A	V	N	I	A	D	R	Y	D	A	K	A	V	K	E	R	L	A	M	M	T	P	Q	N	A	R	I	W	Y	I	S	P	K	E	P	H	N	K	T	A	Y	F	V	D	A	P	Y	Q	V	D	K	I	S	A	Q	T	F	A	D	W	Q	K	K	A	A	D	I	A	L	S	L	P	E	L	N
Template Known Secondary structure		G	G	T	T	T	T	T	T																		S	G	G	G								T	T								T	T	T																							T
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.			540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		G	R	N	L	S	L	T	V	D	A	D	P	Q	A	E	I	S	S	K	E	T	L	A	E	N	L	T	S	L	T	L	S	N	G	A	R	V	I	L	A	K	S	A	G	.	.	E	E	Q	K	L	Q	I	I	A	V	S	N	K	G	D	L	S	F	P	A	Q	Q	K	S	L	I	A	L	A	N	K	A	V	S
Query Conservation																																														.	.
Alig confidence		.	.	.	.	.	.	.																																						.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	P	Y	I	P	D	D	F	S	L	I	K	S	E	K	K	Y	D	H	P	E	L	I	V	D	E	S	N	L	R	V	V	Y	A	P	S	R	Y	F	A	S	E	P	K	A	D	V	S	L	I	L	R	N	P	K	A	M	D	S	A	R	N	Q	V	M	F	A	L	N	D	Y	L	A	G
Template Known Secondary structure		.	.	.	.	.	.	.	T	T											S	S			S	S								T	T									S	S		T	T	S	S											G	G	G	G	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	G	V	G	E	L	S	S	S	S	L	K	R	W	S	A	E	N	S	V	T	M	S	S	K	V	S	G	M	N	T	L	L	S	V	S	A	R	T	N	N	P	E	P	G	F	Q	L	I	N	Q	R	I	T	H	S	T	I	N	D	N	I	W	A	S	L	Q	N	A	Q	I	Q	A	L	K	T	L	D	Q
Query Conservation
Alig confidence			.	.	.	.	.	.																				.
Template Conservation			.	.	.	.	.	.																				.
Template Sequence		L	.	.	.	.	.	.	A	L	D	Q	L	S	N	Q	A	S	V	G	G	I	S	F	S	T	N	.	A	N	N	G	L	M	V	N	A	N	G	Y	T	Q	R	L	P	Q	L	F	Q	A	L	L	E	G	Y	F	S	Y	T	A	T	E	D	Q	L	E	Q	A	K	S	W	Y	N	Q	M	M	D	S	A	E	K
Template Known Secondary structure			.	.	.	.	.	.												T	T							.		S	S										S	S	S																			S																		S
Template Predicted Secondary structure			.	.	.	.	.	.																				.
Template SS confidence
		578							.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.		.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.		.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		R	P	A	E	K	F	A	Q	Q	M	Y	E	T	R	Y	A	D	D	R	T	K	.	L	L	Q	E	N	Q	I	A	Q	F	T	A	A	D	A	L	A	A	D	R	Q	L	F	S	S	P	A	D	I	T	F	V	I	V	G	N	V	A	E	D	K	L	V	A	L	I	T	R	Y	L	G	S	I	K	H	S	D	S
Query Conservation																							.
Alig confidence																							.																								.
Template Conservation																																															.
Template Sequence		G	K	A	F	E	Q	A	I	M	P	A	Q	M	L	S	Q	V	P	Y	F	S	R	D	E	R	R	K	I	L	P	S	I	T	L	K	E	V	L	A	Y	R	D	A	L	K	.	S	G	A	R	P	E	F	M	V	I	G	N	M	T	E	A	Q	A	T	T	L	A	R	D	V	Q	K	Q	L	G	A	D	G	S
Template Known Secondary structure		S													T	T	S	S	S											G	G	G															.	T	T										S																		T				S
Template Predicted Secondary structure																																															.
Template SS confidence
		651	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.		.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
		733	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	A	G	K	P	L	T	R	A	T	D	N	A	S	V	T	V	K	E	Q	N	E	P	V	A	Q	V	S	Q	W	K	R	Y	D	S	R	T	P	V	N	L	P	T	R	M	A	L	D	A	F	N	V	A	L	A	K	D	L	R	V	N	I	R	E	Q	A	S	G	A	Y	S	V	S	S	R	L	S	V
Query Conservation
Alig confidence																																		.	.
Template Conservation																																		.	.
Template Sequence		E	W	C	R	N	K	D	V	V	V	D	K	K	Q	S	V	I	F	E	K	A	G	N	S	T	D	S	A	L	A	A	V	.	.	F	V	P	T	G	Y	D	E	Y	T	S	S	A	Y	S	S	L	L	G	Q	I	V	Q	P	W	F	Y	N	Q	L	R	T	E	E	Q	L	G	Y	A	V	F	A	F	P	M	S
Template Known Secondary structure													S											S	S	S								.	.				S	S																						T					T	S			S	S	S
Template Predicted Secondary structure																																		.	.
Template SS confidence
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.			.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
		813	.	.	.	.	.	.	820	.	.	.	.	.	.	.		.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.		.	890
Predicted Secondary structure																	.																																																														.
Query SS confidence																	.																																																														.
Query Sequence		D	P	Q	A	K	D	I	S	H	L	L	A	F	T	C	.	Q	P	E	R	H	D	E	L	L	T	L	A	N	E	V	M	V	K	R	L	A	K	G	I	S	E	Q	E	L	N	E	Y	Q	Q	N	V	Q	R	S	L	D	I	Q	Q	R	S	V	Q	Q	L	A	N	T	I	V	N	S	L	I	Q	Y	.	D	D
Query Conservation																	.																																																														.
Alig confidence																	.																							.																																							.
Template Conservation																																								.
Template Sequence		V	G	R	Q	W	G	M	G	F	L	L	Q	S	N	D	K	Q	P	S	F	L	W	E	R	Y	K	A	F	F	P	T	A	E	A	K	L	R	A	.	M	K	P	D	E	F	A	Q	I	Q	Q	A	V	I	T	Q	M	L	Q	A	P	Q	T	L	G	E	E	A	S	K	L	S	K	D	F	D	R	G	N	M	R
Template Known Secondary structure			T	T											S	S	S																						T	.																		T				S	S															T		T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		808	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.		.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.
		891	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	A	W	T	E	Q	E	Q	L	L	K	Q	M	T	V	E	N	V	N	T	A	V	K	Q	Y	L	S	H	P	V	N	T	Y	T	G	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	D	S	R	D	K	I	V	A	Q	I	K	L	L	T	P	Q	K	L	A	D	F	F	H	Q	A	V	V	E	P	Q	G	M	A	I	L	S	Q
Template Known Secondary structure														T														T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		887	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.