Job Description P31828 Confidence 100.00% Date Thu Jan 5 11:48:53 GMT 2012 Rank 8 Aligned Residues 423 % Identity 18% Template c1nu1A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase complex core protein i, PDBTitle: crystal structure of mitochondrial cytochrome bc1 complexed with 2-2 nonyl-4-hydroxyquinoline n-oxide (nqno) Resolution 3.20 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	I	A	A	A	L	P	Q	D	E	K	L	I	T	G	Q	L	D	N	G	L	R	Y	M	I	Y	P	H	A	H	P	K	D	Q	V	N	L	W	L	Q	I	H	T	G	S	L	Q	E	E	D	N	E	L	G	V	A	H	F	V	E	H	M	M	F	N	G	T	K	T	W	P	G	N	K	V	I	E	T	F
Query Conservation
Alig confidence																																		.	.
Template Conservation																																		.	.
Template Sequence		A	T	Y	A	Q	A	L	Q	S	V	P	E	T	Q	V	S	Q	L	D	N	G	L	R	V	A	S	E	Q	S	S	Q	P	.	.	T	C	T	V	G	V	W	I	D	A	G	S	R	Y	E	S	E	K	N	N	G	A	G	Y	F	V	E	H	L	A	F	K	G	T	K	N	R	P	G	N	A	L	E	K	E	V
Template Known Secondary structure											S									T	T	S							B		S		S	.	.									S			S	T	T	S		T	T	T	T	T									T	T	S		B	S	S	S		T	T
Template Predicted Secondary structure																																		.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	M	G	L	R	F	G	R	D	V	N	A	Y	T	S	Y	D	E	T	V	Y	Q	V	S	L	P	T	T	Q	K	Q	N	L	Q	Q	V	M	A	I	F	S	E	W	S	N	A	A	T	F	E	K	L	E	V	D	A	E	R	G	V	I	T	E	E	W	R	A	H	Q	D	A	K	W	R	T	S	Q	A	R
Query Conservation
Alig confidence					.	.	.	.																				.	.	.
Template Conservation					.	.	.	.																				.	.	.
Template Sequence		E	S	M	.	.	.	.	G	A	H	L	N	A	Y	S	T	R	E	H	T	A	Y	Y	I	K	A	.	.	.	L	S	K	D	L	P	K	A	V	E	L	L	A	D	I	V	Q	N	C	S	L	E	D	S	Q	I	E	K	E	R	D	V	I	L	Q	E	L	Q	E	N	D	T	S	M	R	D	V	V	F	N	Y
Template Known Secondary structure				T	.	.	.	.	T									S	S									.	.	.		G	G	G															B																						T	T
Template Predicted Secondary structure					.	.	.	.																				.	.	.
Template SS confidence
		80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	F	L	L	A	N	T	R	N	L	D	R	E	P	I	G	L	M	D	T	V	A	T	V	T	P	A	Q	L	R	Q	F	Y	Q	R	W	Y	Q	P	N	N	M	T	F	I	V	V	G	D	I	D	S	K	E	A	L	A	L	I	K	D	N	L	S	K	L	P	A	N	K	A	A	E	N	R	V	W	P	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	A	T	A	F	Q	G	T	P	L	A	Q	S	V	E	G	P	S	E	N	V	R	K	L	S	R	A	D	L	T	E	Y	L	S	R	H	Y	K	A	P	R	M	V	L	A	A	A	G	G	L	E	H	R	Q	L	L	D	L	A	Q	K	H	F	S	G	L	S	G	T	Y	D	E	D	A	V	P	T	L	S
Template Known Secondary structure							T	T	T	S	G	G	G	S		S	S																								G	G	G							B	S																S	S	G	G	G			S	S	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.									310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.
Query Sequence		K	A	E	N	H	L	R	F	N	I	I	N	D	K	E	N	R	V	N	G	I	A	L	Y	Y	R	L	P	M	V	Q	V	N	D	E	Q	S	F	I	E	Q	A	E	W	S	M	L	.	.	.	.	.	.	.	.	V	Q	L	F	N	Q	R	L	Q	E	R	I	Q	S	G	E	L	K	T	I	S	G	G	T	A
Query Conservation																																																	.	.	.	.	.	.	.	.
Alig confidence																																.	.																.	.	.	.	.	.	.	.																									.
Template Conservation																																.	.																																																.
Template Sequence		P	C	R	F	T	G	S	Q	I	C	H	R	E	D	G	L	P	L	A	H	V	A	I	A	V	E	G	P	G	W	.	.	A	H	P	D	N	V	A	L	Q	V	A	N	A	I	I	G	H	Y	D	C	T	Y	G	G	G	A	H	L	S	S	P	L	A	S	I	A	A	T	N	K	L	C	Q	S	F	Q	T	.
Template Known Secondary structure															T	T	S	S	S												T	.	.	T		T																	T	T		S		S	T	T		S	S										T			S					.
Template Predicted Secondary structure																																.	.																																																.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	V	K	I	A	P	D	Y	Q	S	L	F	F	R	V	N	A	R	D	D	N	M	Q	D	A	A	N	A	L	M	A	E	L	A	T	I	D	Q	H	G	F	S	A	E	E	L	D	D	V	K	S	T	R	L	T	W	L	K	N	A	V	D	Q	Q	A	E	R	D	L	R	M	L	T	S	R	L	A	S	S
Query Conservation
Alig confidence		.																																							.																									.	.	.	.	.
Template Conservation		.																																							.																									.	.	.	.	.
Template Sequence		.	F	N	I	C	Y	A	D	T	G	L	L	G	A	H	F	V	C	D	H	M	S	I	D	D	M	M	F	V	L	Q	G	Q	W	M	R	L	C	T	.	S	A	T	E	S	E	V	L	R	G	K	N	L	L	R	N	A	L	V	S	H	L	D	G	.	.	.	.	.	T	T	P	V	C	E	D	I	G	R	S
Template Known Secondary structure		.						T	T												T	T																			.																						S		S	.	.	.	.	.
Template Predicted Secondary structure		.																																							.																									.	.	.	.	.
Template SS confidence
			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.						.	.	.	.	.	.	.	.	380	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	N	N	T	P	F	L	S	P	E	E	T	Y	Q	L	S	K	R	L	W	Q	Q	I	T	V	Q	S	L	A	E	K	W	Q	Q	L	R	K	N	Q	D	A	F	W	E	Q	M	V	N	N	E	V	A	A
Query Conservation
Alig confidence														.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		L	L	T	Y	G	R	R	I	P	L	A	E	.	.	.	.	W	E	S	R	I	A	E	V	D	A	R	V	V	R	E	V	C	S	K	Y	F	Y	D	Q	C	P	A	V	A	G	F	G	P	I	E	Q	L	P
Template Known Secondary structure						S	S							.	.	.	.																						T	T										S	G	G	G	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.					.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.