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Job DescriptionP31828
Confidence100.00%DateThu Jan 5 11:48:53 GMT 2012
Rank13Aligned Residues413
% Identity15%Templatec1l0lB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:ubiquinol-cytochrome c reductase complex core protein 2; PDBTitle: structure of bovine mitochondrial cytochrome bc1 complex with a bound2 fungicide famoxadone
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PQDEKLITGQLDNGLRYMIYPHAHPKDQVNLWLQIHTGSLQEEDNELGVAHFVEHMMFNGTKTWPGNKVIETFESMGLRF
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Template Sequence  PHPQDLEFTRLPNGLVIASLENYAP. . ASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAV. . . .
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TTS




S..S
SGGG

TTSTTTTTS
BTTB
T....
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Query Sequence  GRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAERGVITEEWRAHQDAKWRTSQARRPFLLAN
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Template Sequence  GGKLSVTSTRENMAYTVEC. . . LRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAY.
Template Known Secondary structure  T

SS
...GGG
B


TTSB.
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   93......100.........110. ........120.........130.........140.........150.........160........
 
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Query Sequence  TRNLDREPIGLMDTVATVTPAQLRQFYQRWYQPNNMTFIVVGDIDSKEALALIKDNLSKLPANKAAENRVWPTKAENHLR
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Template Sequence  RNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGV. SHPVLKQVAEQFLNIRGGLGLSGAKAKYHGGEIREQ
Template Known Secondary structure  SSGGGS
SS

GGGTTT

SSGGGSS.





S

S
TT


B

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   169170.........180.........190.........200.........210. ........220.........230.........240.......
 
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Query Sequence  FNIINDKENRVNGIALYYRLPMVQVNDEQSFIEQAEWSMLVQLF. . . . . . . . NQRLQERIQSGELKTISGGTARSVKIAP
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Template Sequence  . . . . . . . . NGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSA. . FNASYS
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S


TTS

S
SSTT


TT


SS..
S
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   248.250.........260.........270.........280.........290.........300.........310. ......
 
   342.......350.........360.........370.........380.........390.........400.........410.........420.
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Query Sequence  DYQSLFFRVNARDDNMQDAANALMAELATIDQHGFSAEELDDVKSTRLTWLKNAVDQQAERDLRMLTSRLASSSLNNTPF
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Template Sequence  DSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVES. . . . . SEGFLDEVGSQALAAGSY
Template Known Secondary structure  S
GGGTT


TSS.....SS
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   318.320.........330.........340.........350.........360.........370.... .....380.........390..
 
   422.......430.........440.........450.........460.........470..
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Query Sequence  LSPEETYQLSKRLWQQITVQSLAEKWQQLRKNQDAFWEQMVNNEVAAKKAL
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Template Sequence  TPPST. . . . VLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL
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GGG


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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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