Job Description P31828 Confidence 100.00% Date Thu Jan 5 11:48:53 GMT 2012 Rank 7 Aligned Residues 417 % Identity 17% Template c1hr9D_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:mitochondrial processing peptidase beta subunit; PDBTitle: yeast mitochondrial processing peptidase beta-e73q mutant2 complexed with malate dehydrogenase signal peptide Resolution 3.01 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	I	T	G	Q	L	D	N	G	L	R	Y	M	I	Y	P	H	A	H	P	K	D	Q	V	N	L	W	L	Q	I	H	T	G	S	L	Q	E	E	D	N	E	L	G	V	A	H	F	V	E	H	M	M	F	N	G	T	K	T	W	P	G	N	K	V	I	E	T	F	E	S	M	G	L	R	F	G	R	D
Query Conservation
Alig confidence																									.																																																		.	.	.	.
Template Conservation																									.																																																		.	.	.	.
Template Sequence		P	G	T	R	T	S	K	L	P	N	G	L	T	I	A	T	E	Y	I	P	N	T	S	.	S	A	T	V	G	I	F	V	D	A	G	S	R	A	E	N	V	K	N	N	G	T	A	H	F	L	Q	H	L	A	F	K	G	T	Q	N	R	P	Q	Q	G	I	E	L	E	I	E	N	I	.	.	.	.	G	S	H
Template Known Secondary structure										T	T	S									S	S		S	.									S		S	G	G	G	S		T	T	T	T	T									G	G	G	B	B	S	S	S	B												.	.	.	.	T
Template Predicted Secondary structure																									.																																																		.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.					.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	A	Y	T	S	Y	D	E	T	V	Y	Q	V	S	L	P	T	T	Q	K	Q	N	L	Q	Q	V	M	A	I	F	S	E	W	S	N	A	A	T	F	E	K	L	E	V	D	A	E	R	G	V	I	T	E	E	W	R	A	H	Q	D	A	K	W	R	T	S	Q	A	R	R	P	F	L	L	A	N	T	R	N
Query Conservation
Alig confidence																		.	.	.
Template Conservation																		.	.	.
Template Sequence		L	N	A	Y	T	S	R	E	N	T	V	Y	Y	A	K	S	.	.	.	L	Q	E	D	I	P	K	A	V	D	I	L	S	D	I	L	T	K	S	V	L	D	N	S	A	I	E	R	E	R	D	V	I	I	R	E	S	E	E	V	D	K	M	Y	D	E	V	V	F	D	H	L	H	E	I	T	Y	K	D	Q	P
Template Known Secondary structure								S	S									.	.	.		G	G	G													S	S	B				T	T																	T	T															T	T	T	S	T
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	R	E	P	I	G	L	M	D	T	V	A	T	V	T	P	A	Q	L	R	Q	F	Y	Q	R	W	Y	Q	P	N	N	M	T	F	I	V	V	G	D	I	D	S	K	E	A	L	A	L	I	K	D	N	L	S	K	L	P	A	N	K	A	A	E	N	R	V	W	P	T	K	A	E	N	H	L	R	F	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	R	T	I	L	G	P	I	K	N	I	K	S	I	T	R	T	D	L	K	D	Y	I	T	K	N	Y	K	G	D	R	M	V	L	A	G	A	G	A	V	D	H	E	K	L	V	Q	Y	A	Q	K	Y	F	G	H	V	P	K	S	E	S	P	V	P	L	G	S	P	R	G	P	L	P	V	F	C	R	G	E
Template Known Secondary structure		T	T	S		S	S																								G	G	G								S															T	T	S				S	S				T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310										.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.
Query Sequence		I	N	D	K	E	N	R	V	N	G	I	A	L	Y	Y	R	L	P	M	V	Q	V	N	D	E	Q	S	F	I	E	Q	A	E	W	S	M	L	V	.	.	.	.	.	.	.	.	.	Q	L	F	N	Q	R	L	Q	E	R	I	Q	S	G	E	L	K	T	I	S	G	G	T	A	R	S	V	K	I	A	P	D	Y
Query Conservation																																								.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	F	I	K	E	N	T	L	P	T	T	H	I	A	I	A	L	E	G	V	S	W	S	A	P	D	Y	F	V	A	L	A	T	Q	A	I	V	G	N	W	D	R	A	I	G	T	G	T	N	S	P	S	P	L	A	V	A	A	S	Q	N	G	S	L	A	N	S	Y	M	S	F	S	T	S	Y	A	D	S	G	L
Template Known Secondary structure							T	T		S													T	T		T	T																T	T	T	B		S	S	S	S										S	T	T		S		S										S	S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	L	F	F	R	V	N	A	R	D	D	N	M	Q	D	A	A	N	A	L	M	A	E	L	A	T	I	D	Q	H	G	F	S	A	E	E	L	D	D	V	K	S	T	R	L	T	W	L	K	N	A	V	D	Q	Q	A	E	R	D	L	R	M	L	T	S	R	L	A	S	S	S	L	N	N	T	P	F	L	S
Query Conservation
Alig confidence																																																									.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		W	G	M	Y	I	V	T	D	S	N	E	H	N	V	R	L	I	V	N	E	I	L	K	E	W	K	R	I	K	S	G	K	I	S	D	A	E	V	N	R	A	K	A	Q	L	K	A	A	L	L	L	S	L	D	G	.	.	.	.	.	S	T	A	I	V	E	D	I	G	R	Q	V	V	T	T	G	K	R	L	S
Template Known Secondary structure										T	T	T																			T	T																				T	T			S	.	.	.	.	.																S	S
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390						.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	E	T	Y	Q	L	S	K	R	L	W	Q	Q	I	T	V	Q	S	L	A	E	K	W	Q	Q	L	R	K	N	Q	D	A	F	W	E	Q	M	V	N	N	E	V
Query Conservation
Alig confidence					.	.	.	.
Template Conservation					.	.	.	.
Template Sequence		P	E	E	.	.	.	.	V	F	E	Q	V	D	K	I	T	K	D	D	I	I	M	W	A	N	Y	R	L	Q	N	K	P	V	S	M	V	A	L	G	N	T	S	T
Template Known Secondary structure					.	.	.	.							T														S	S	S											G	G	G
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		411	.	.					.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.