Job Description P31828 Confidence 100.00% Date Thu Jan 5 11:48:53 GMT 2012 Rank 9 Aligned Residues 411 % Identity 13% Template c1hr6C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:mitochondrial processing peptidase alpha subunit; PDBTitle: yeast mitochondrial processing peptidase Resolution 2.50 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	I	T	G	Q	L	D	N	G	L	R	Y	M	I	Y	P	H	A	H	P	K	D	Q	V	N	L	W	L	Q	I	H	T	G	S	L	Q	E	E	D	N	E	L	G	V	A	H	F	V	E	H	M	M	F	N	G	T	K	T	W	P	G	N	K	V	I	E	T	F	E	S	M	G	L	R	F	G	R	D	V
Query Conservation
Alig confidence																							.	.																																																		.	.	.	.
Template Conservation																							.	.																																																		.	.	.	.
Template Sequence		N	F	K	L	S	S	L	A	N	G	L	K	V	A	T	S	N	T	P	G	H	.	.	F	S	A	L	G	L	Y	I	D	A	G	S	R	F	E	G	R	N	L	K	G	C	T	H	I	L	D	R	L	A	F	K	S	T	E	H	V	E	G	R	A	M	A	E	T	L	E	L	L	.	.	.	.	G	G	N	Y
Template Known Secondary structure									T	T	S							S				S	.	.	S								S			G	G	G		T	T	T	T	T	T									T	T	S		B	S	S	S												T	.	.	.	.	T	S
Template Predicted Secondary structure																							.	.																																																		.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.					.	.	90	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	Y	T	S	Y	D	E	T	V	Y	Q	V	S	L	P	T	T	Q	K	Q	N	L	Q	Q	V	M	A	I	F	S	E	W	S	N	A	A	T	F	E	K	L	E	V	D	A	E	R	G	V	I	T	E	E	W	R	A	H	Q	D	A	K	W	R	T	S	Q	A	R	R	P	F	L	L	A	N	T	R	N	L
Query Conservation
Alig confidence																	.	.	.
Template Conservation																	.	.	.
Template Sequence		Q	C	T	S	S	R	E	N	L	M	Y	Q	A	S	V	.	.	.	F	N	Q	D	V	G	K	M	L	Q	L	M	S	E	T	V	R	F	P	K	I	T	E	Q	E	L	Q	E	Q	K	L	S	A	E	Y	E	I	D	E	V	W	M	K	P	E	L	V	L	P	E	L	L	H	T	A	A	Y	S	G	E	T	L
Template Known Secondary structure							S	S									.	.	.		G	G	G															B																						T	T															T	T	T	S	G	G
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	E	P	I	G	L	M	D	T	V	A	T	V	T	P	A	Q	L	R	Q	F	Y	Q	R	W	Y	Q	P	N	N	M	T	F	I	V	V	G	D	I	D	S	K	E	A	L	A	L	I	K	D	N	L	S	K	L	P	A	N	K	A	A	E	N	R	V	W	P	T	K	A	E	N	H	L	R	F	N	I	I
Query Conservation
Alig confidence																																											.
Template Conservation																																											.
Template Sequence		G	S	P	L	I	C	P	R	G	L	I	P	S	I	S	K	Y	Y	L	L	D	Y	R	N	K	F	Y	T	P	E	N	T	V	A	A	F	V	G	V	P	H	.	E	K	A	L	E	L	T	G	K	Y	L	G	D	W	Q	S	T	H	P	P	I	T	K	K	V	A	Q	Y	T	G	G	E	S	C	I	P	P	A
Template Known Secondary structure		G	S		S	S			G	G	G	G	G	G																G	G	G							S	S			.												T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.												.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	K	E	N	R	V	N	G	I	A	L	Y	Y	R	L	P	M	V	Q	V	N	D	E	Q	S	F	I	E	Q	A	E	W	S	M	L	V	Q	.	.	.	.	.	.	.	.	.	.	.	L	F	N	Q	R	L	Q	E	R	I	Q	S	G	E	L	K	T	I	S	G	G	T	A	R	S	V	K	I	A	P	D
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																																																																									.	.
Template Sequence		P	V	F	G	N	L	P	E	L	F	H	I	Q	I	G	F	E	G	L	P	I	D	H	P	D	I	Y	A	L	A	T	L	Q	T	L	L	G	G	G	G	S	F	S	A	G	G	P	G	K	G	M	Y	S	R	L	Y	T	H	V	L	N	Q	Y	Y	F	V	E	N	C	V	A	.	.	F	N	H	S	Y	S	D
Template Known Secondary structure					S	S	S															T	T	S	T	T																S	S			S	S	T	T	S		T	T	S						T	T	T	T		S	S							.	.						S	S
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.				.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		Y	Q	S	L	F	F	R	V	N	A	R	D	D	N	M	Q	D	A	A	N	A	L	M	A	E	L	A	T	I	D	Q	H	G	.	.	.	F	S	A	E	E	L	D	D	V	K	S	T	R	L	T	W	L	K	N	A	V	D	Q	Q	A	E	R	D	L	R	M	L	T	S	R	L	A	S	S	S	L	N	N	T
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.																								.	.	.	.	.
Template Conservation																																																													.	.	.	.	.
Template Sequence		S	G	I	F	G	I	S	L	S	C	I	P	Q	A	A	P	Q	A	V	E	V	I	A	Q	Q	M	Y	N	T	F	A	N	K	D	L	R	L	T	E	D	E	V	S	R	A	K	N	Q	L	K	S	S	L	L	M	N	L	E	S	.	.	.	.	.	K	L	V	E	L	E	D	M	G	R	Q	V	L	M	H	G
Template Known Secondary structure													G	G	G														T	T	T	T		T	T	S																						T	T	S	.	.	.	.	.																S
Template Predicted Secondary structure																																																													.	.	.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.						.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	L	S	P	E	E	T	Y	Q	L	S	K	R	L	W	Q	Q	I	T	V	Q	S	L	A	E	K	W	Q	Q	L	R	K	N	Q	D	A	F	W	E	Q	M	V	N	N	E
Query Conservation
Alig confidence									.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		R	K	I	P	V	N	E	.	.	.	.	M	I	S	K	I	E	D	L	K	P	D	D	I	S	R	V	A	E	M	I	F	T	G	N	V	N	N	A	G	N	G	K	G	R	A
Template Known Secondary structure									.	.	.	.							T															T	T					T	T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		401	.	.	.	.	.	.					.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.