Job Description P39336 Confidence 16.89% Date Thu Jan 5 11:59:27 GMT 2012 Rank 8 Aligned Residues 33 % Identity 33% Template c3ik5A_ PDB info PDB header:viral protein/signaling protein Chain: A: PDB Molecule:protein nef; PDBTitle: sivmac239 nef in complex with tcr zeta itam 1 polypeptide2 (a63-r80) Resolution 2.05 Å

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		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.										.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.
Query Sequence		M	P	H	V	C	D	E	S	I	S	Y	L	L	G	E	K	G	I	L	E	.	.	.	.	.	.	.	.	.	E	I	D	K	L	Y	A	L	N	D	H	G	I
Query Conservation																						.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	Y	K	L	A	I	D	M	S	H	F	I	K	E	K	G	G	L	E	G	I	Y	Y	S	A	R	R	H	R	I	L	D	I	Y	L	E	K	E	E	G	I
Template Known Secondary structure																		T		S	T	T		B																T	T		B
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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